Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0770 |
Symbol | tgt |
ID | 4078082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 825392 |
End bp | 826522 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638006067 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_612765 |
Protein GI | 99080611 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.196276 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGAGC TTTTCAACTT TGAAATGACA GCAACGGACG GCAAAGCACG CACGGGTGTA ATCCATACAC CACGCGGCGA GATCCGTACC CCTGCTTTCA TGCCGGTAGG CACTGCTGCG ACCGTCAAGG CGATGATGCC CGAAAGCGTG CGCGCAACCG GAGCGGACAT TCTGTTGGGC AATACCTATC ACCTGATGCT GCGCCCGACT GCCGAACGGA TCGACCGTCT GGGGGGCTTG CACAAATTCA TGAACTGGGA CCGCCCGATC CTCACCGACT CCGGCGGGTT TCAGGTGATG TCGCTCGCGG GTCTGCGCAA GCTCACCGAA AAAGGCGTGA CGTTCAAATC TCATATCGAT GGGTCGCGCC ACGAGCTGAC GCCGGAACGC TCGATGGAGA TTCAACGACT GCTGGGCTCT GACATTGTGA TGTGTTTCGA CGAATGCCCC GCGCTGCCTG CCGACCGGGA TCGCATCGCC GAGAGCATGC GTCTGTCGAT GCGCTGGGCG GAACGCTCGC GCGAGGCCTT TGGCGACCGG CCGGGACATG CGCTCTTTGG CATTCAGCAG GGTGGGCTGG AACAGGATTT CCGCGAGGAA AGCGCAGAAG CCCTCACCAA GATTGGCTTT GATGGCTACG CGGTGGGTGG TCTTGCGGTG GGCGAGGGGC AAGAGGCCAT GTTTGGCTGT CTGGATTACG CGCCCGACAT GCTGCCGGTT GATAAGCCGC GCTATCTGAT GGGCGTCGGC AAGCCCGATG ATATCGTGGG CGCGGTGTCC CGTGGTATCG ACATGATGGA CTGCGTGTTG CCGTCGCGCT CTGGTCGCAC GGGGCAGGCG TTCACTCGGC ATGGTGTGGT CAATATCAAG AATGCGCGCC ATCAGGACGA CCCGCGCCCG CTGGATGAGA ATTGCAGCTG TCCGGCATGC AGCAATTATT CGCGCGCCTA TCTGCACCAC GTGTTCCGGT CGAACGAGAT GATCTCCGGC ATGCTTTTGA CATGGCACAA CCTGCATTAC TTCCAAGACA TCATGGCTGG CATGCGGGAG TCAATTGCAG CGGGCACATT TGAGGCGTGG CAGAAGACGT TCCACGAGAC GCGCGCCCAA GGCGATATCG AGCCGCTCTG A
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Protein sequence | MAELFNFEMT ATDGKARTGV IHTPRGEIRT PAFMPVGTAA TVKAMMPESV RATGADILLG NTYHLMLRPT AERIDRLGGL HKFMNWDRPI LTDSGGFQVM SLAGLRKLTE KGVTFKSHID GSRHELTPER SMEIQRLLGS DIVMCFDECP ALPADRDRIA ESMRLSMRWA ERSREAFGDR PGHALFGIQQ GGLEQDFREE SAEALTKIGF DGYAVGGLAV GEGQEAMFGC LDYAPDMLPV DKPRYLMGVG KPDDIVGAVS RGIDMMDCVL PSRSGRTGQA FTRHGVVNIK NARHQDDPRP LDENCSCPAC SNYSRAYLHH VFRSNEMISG MLLTWHNLHY FQDIMAGMRE SIAAGTFEAW QKTFHETRAQ GDIEPL
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