| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0743 |
|---|
| Symbol | |
|---|
| ID | 4076113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 800625 |
|---|
| End bp | 801230 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638006040 |
|---|
| Product | NADH dehydrogenase subunit C |
|---|
| Protein accession | YP_612738 |
|---|
| Protein GI | 99080584 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit |
|---|
| TIGRFAM ID | [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAG CATTGCAAGA CCTTGGCCAC CAGATTGAAG CCAAGCGCCC CGAGTGCGTA
TTGTCCTGGG ATATTGCCCA TGGCGAACTG AACATCGACG TAAAGCCCGC CAACATCGCG
GGCCTCGTTG AATTCCTGCG CGTCGACAGC GCCTGCCGGT TCTCCACGCT GGTGGACATT
ACCGCAGTGG ACTATCCCGA GCGCACCAAG CGTTTTGACG TGGTGTATCA CCTCCTTTCG
ATGTACCAGA ACCAGCGCAT CCGTCTGCGC GCAGCCGTGC GCGAAGAGGA CATGGTGCCC
TCCATCGTGG ATGTGCACCC CTCCGCCAAC TGGTTCGAGC GCGAAGTCTT TGACATGTTC
GGCATCCTGT TCACGGGGCA CCCGGACCTG CGCCGCCTGC TGACGGACTA TGGCTTCCGC
GGCCACCCGC TGCGCAAGGA TTTCCCGACC ACCGGTTACA CCGAAGTGCG CTATGACGAG
GCGCAAAAGC GCGTGGTCTA CGAGCCGGTG AAGCTGGTTC AGGAATACCG CCAGTTTGAC
TTCATGAGCC CTTGGGAAGG TGCGGAATAT ATCCTGCCGG GTGACGAGAA AGAGATCGCG
AAATGA
|
|---|
| Protein sequence | MIEALQDLGH QIEAKRPECV LSWDIAHGEL NIDVKPANIA GLVEFLRVDS ACRFSTLVDI
TAVDYPERTK RFDVVYHLLS MYQNQRIRLR AAVREEDMVP SIVDVHPSAN WFEREVFDMF
GILFTGHPDL RRLLTDYGFR GHPLRKDFPT TGYTEVRYDE AQKRVVYEPV KLVQEYRQFD
FMSPWEGAEY ILPGDEKEIA K
|
|---|
| |