Gene TM1040_0723 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0723 
Symbol 
ID4077000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp780104 
End bp781408 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content64% 
IMG OID638006020 
Productthree-deoxy-D-manno-octulosonic-acid transferase-like 
Protein accessionYP_612718 
Protein GI99080564 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1519] 3-deoxy-D-manno-octulosonic-acid transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.717213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATC CATCGCAGGT CGCCCCGACC CTGCTCTATC ACCTCTATCG CGGTGCCAGC 
ACGCTCTTGG CGCCGCTGAT GTGGTCCAAA GTTGCAGGCA AGCTGCGTGC GCATGGGCTT
CCGGAAGAAC GGGTTCGTGA ACGCCTCGGG CACGCGACCC TGCAGCGCCC CAAGGGCCGA
CTGATCTGGT TTCATGCCGC CTCTGTCGGC GAGAGCCTGT CGGTCCTCAC GCTGATCAAA
CGTCTGGGCA CCATGGCGCC GGATCTGGAA TTCCTGATCA CCTCGGGCAC ACCCACATCT
GCCGATCTGG TCGCAAAACG CCTGCCTCCC CGCACCCGCC ACCAGTTTCC GCCTCTGGAC
ACCAGAGCCG CGGTGACGCG ATTTCTGAAC CATTGGCAGC CGGACCTCGG GGTCTTTGTC
GAAAGCGAGC TTTGGCCGCA AATGCTGGTG CGCGCGCGCG ATGCGGGCGT CCCATTGGTG
CTGCTCAATG CGCGTCTTTC GCCCAAATCG GTCGCCAGCT GGAAGAAACG GCACGCCACC
GCGCGGTTTC TACTGGATCA GCTTGCGCTG ATGCTCACCC AGAACAGCCA GACGGCGATC
AACCTCAAGG CCATTGGTGC AGACCCCACA CGTTTGCGCG CTGGCAGCAA CCTTAAGGCG
CTCTCGGAGC CCCTGCCAGT GGATCAGGCC ATCCTGGAGG ACGTCCGGGA CGCAATCGGT
GCGCGACCGG TCTGGGTCGC TTCCTCCACC CATGAGGGCG AGGAGGAAGT CGTGTTAGAG
GCGCATAGAG CGCTCTTGGC GGATCATCCG GATCTGCTGC TCTTGCTCGC GCCACGCCAC
CCACACCGGG GCGATCAAAT CGAAGCGATG ATTGCCGAGG CAGGCCTCAC TTCCATTCGG
CGCAGTCGGG ACGCCCTGCC CCGCACCTCG ACACAGGTGT ATCTTGCGGA CACATTGGGC
GAAGTGGGCA TCTGGTACAG CCTGTGCCCA CGGGTCTTCC TTGGCGGTTC TCTCCGCGAA
ATCGGAGGGC ACAACCCCTT TGAGGTGATG CAAGCGGGAG GCGCGGTGCT GACTGGGTCC
GGGGCCTATA ATTTTGCCGA ATCCTTTGCG GAGCTGATCG AGCTAGGCGC GGCCCATGAA
GTTCAGGATG CCAGCTCGCT TGCCGACGCG GTCAGGACTT GGCTCGACGC GCCGCATACC
CTAGACACGG CCCGCGCGCG GGCACGCGAT TTTCTGGCCC GCCAATCCGA CCAGATGGAT
GACACTGTGA CGGCGCTGCT CGACTTGCTG CCGTCCCCCA CATAA
 
Protein sequence
MTDPSQVAPT LLYHLYRGAS TLLAPLMWSK VAGKLRAHGL PEERVRERLG HATLQRPKGR 
LIWFHAASVG ESLSVLTLIK RLGTMAPDLE FLITSGTPTS ADLVAKRLPP RTRHQFPPLD
TRAAVTRFLN HWQPDLGVFV ESELWPQMLV RARDAGVPLV LLNARLSPKS VASWKKRHAT
ARFLLDQLAL MLTQNSQTAI NLKAIGADPT RLRAGSNLKA LSEPLPVDQA ILEDVRDAIG
ARPVWVASST HEGEEEVVLE AHRALLADHP DLLLLLAPRH PHRGDQIEAM IAEAGLTSIR
RSRDALPRTS TQVYLADTLG EVGIWYSLCP RVFLGGSLRE IGGHNPFEVM QAGGAVLTGS
GAYNFAESFA ELIELGAAHE VQDASSLADA VRTWLDAPHT LDTARARARD FLARQSDQMD
DTVTALLDLL PSPT