| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0716 |
|---|
| Symbol | |
|---|
| ID | 4076993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 771989 |
|---|
| End bp | 773809 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638006013 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_612711 |
|---|
| Protein GI | 99080557 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.953426 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGACC AGCCCATTGC ACAGATCAAA GGCCTTCGGG TCGAATTCGA AACCAAGGAC
GGCCCTGTGG TCGGGGTTGA GAATGTTTCG TTTGACGTGA CTGCTGGTGA AACTTTGTGC
ATCGTTGGGG AGTCCGGATC GGGCAAATCT GTCTCGTCCC TGTCTTTGAT GCGCCTCGTG
GAATACGGTG GCGGCACCAT CGCGGGCGGA GAATTGATGT TCAATCCCGG CGATGGCGAG
GCGATCGACC TTGCTCAGGC CGAGACCGAT TTGATGAAGC AGATTCGCGG AAATCAGATC
GGAATGATTT TCCAGGAACC GATGACCGCG CTCAATCCGG TCTTCACAGT GGGCCGCCAG
CTCACGGAAG GCCTGCGAAT CCACAAGGGG ATGGACAAAA AACAGGCAGA GGCCCGGGCC
ATCGAGATTC TGCGCGAGGT CCGCATTCCC GAGGCCGAGC GCCGCATGAA GCAATATCCG
CACGAACTGT CTGGCGGGAT GCGCCAGCGG GTAGTGATCG CGATGGCGAT GGCGTGCGAG
CCGCGTCTGC TCATCGCGGA TGAACCCACA ACCGCGCTCG ATGTGACCAT TCAGGCCGAG
ATCCTCGCCC TGATGGACCG CTTGAAGCGT GAAACCGGCA CTGCGGTCAT GTTTATCACG
CACGACATGG CTGTCGTGGC GCAGATGGCC GACCGGGTGG TTGTCATGTT CCGCGGCAAC
AAGGTCGAAG AGGGCACCGT CCACGAGATT TTCGAGAACC CGCAGCATGA CTATACCAAG
GCATTGCTGG CGGCGGTTCC CAAGCTTGGC GAGATGCGTG GCAAGGATTA CCCCGAACCC
ATGAAGCTCA TGGGCGTCGA GCAGGCCGAG ATCAAGCCGA TCACCGGCAC CGATGAGGTG
CTGCTGAACG TCGAAAACCT CGTCACCCGT TTCCCTGTCA AAGGTGGGCT TCTGCGCCGC
ACCGTGGCGC AGGTCCACGC GGTTGAGGAT GTGTCCTTCA AGGTCTTCAA GGGTCAGACC
CTGAGCCTCG TGGGCGAATC GGGCTGCGGG AAATCAACCT GTGGCCGGTC GATCCTGAGA
CTGGTGGAAC CGACTTCGGG CAAGGTAGAG TTTGAGGGGC GCGATGTGAT CGGCCTCAAC
CAGAAAGAAC TGCACAAGGC GCGCCTTGAT ATGCAGATGA TTTTCCAGGA CCCCTTTGCC
TCACTCAATC CGCAGATGCA GCTGATGGAT CAGGTCGCGG AGCCGATGAA GAACTACAAT
ATCGCCTCCG GGTCCGAAAT TCAGGACCGG GTCGCATCGC TCTTTGATCG GGTCCACCTG
CCGCGCAGCT TCATGCGCCG CTTCCCGCAC GAGATGTCCG GTGGTCAGCG CCAGCGGATC
GCGATTGCCC GTGCGCTCGC GCTCAACCCG AAACTGATCG TTGCGGATGA GGCCGTCTCC
GCGCTCGATG TGTCAGTGCA GGCGCAGGTC TTGAACCTGA TGATGGAACT GCAGGCCGAT
CTGGGCCTCT CCTTCCTGTT CATCAGTCAC GATATGGCCG TGGTCGAACG GGTGAGCCAT
CAGGTCGGCG TGATGTATCT GGGGCGTCTG GTCGAAATTG GCCCGCGTGC GCGTGTGTTT
GAGAACCCGG CGCACCCCTA TACGCAGGCG CTGATGAAGG CGGTTCCGAT TGCCGACCCC
AACCAGCGCA AGAGCGAAAA GGATCTGAAC TTCAAACCGA TCCCATCGCC GATCCACGAC
ATGAACTATC AGGCAGAGCC CTCGCAATAC ATGGAAGTGG AGCCGGGGCA CTTTGTGCTG
ACCACCGATT CTGGCTATTG A
|
|---|
| Protein sequence | MLDQPIAQIK GLRVEFETKD GPVVGVENVS FDVTAGETLC IVGESGSGKS VSSLSLMRLV
EYGGGTIAGG ELMFNPGDGE AIDLAQAETD LMKQIRGNQI GMIFQEPMTA LNPVFTVGRQ
LTEGLRIHKG MDKKQAEARA IEILREVRIP EAERRMKQYP HELSGGMRQR VVIAMAMACE
PRLLIADEPT TALDVTIQAE ILALMDRLKR ETGTAVMFIT HDMAVVAQMA DRVVVMFRGN
KVEEGTVHEI FENPQHDYTK ALLAAVPKLG EMRGKDYPEP MKLMGVEQAE IKPITGTDEV
LLNVENLVTR FPVKGGLLRR TVAQVHAVED VSFKVFKGQT LSLVGESGCG KSTCGRSILR
LVEPTSGKVE FEGRDVIGLN QKELHKARLD MQMIFQDPFA SLNPQMQLMD QVAEPMKNYN
IASGSEIQDR VASLFDRVHL PRSFMRRFPH EMSGGQRQRI AIARALALNP KLIVADEAVS
ALDVSVQAQV LNLMMELQAD LGLSFLFISH DMAVVERVSH QVGVMYLGRL VEIGPRARVF
ENPAHPYTQA LMKAVPIADP NQRKSEKDLN FKPIPSPIHD MNYQAEPSQY MEVEPGHFVL
TTDSGY
|
|---|
| |