Gene TM1040_0683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0683 
SymbolmurC 
ID4077291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp731311 
End bp732720 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content61% 
IMG OID638005980 
ProductUDP-N-acetylmuramate--L-alanine ligase 
Protein accessionYP_612678 
Protein GI99080524 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0773] UDP-N-acetylmuramate-alanine ligase 
TIGRFAM ID[TIGR01082] UDP-N-acetylmuramate--alanine ligase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0186623 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCTG CCACCAAACT GCCCGGCGAC GTCGGCCCGA TCCATTTTGT CGGTATTGGC 
GGCATCGGGA TGTCTGGCAT CGCCGAGGTG CTTTTGAACC TTGGCTATGT GGTGCAGGGC
TCGGATCTCA AGTCCTCCAG GATCACCCAG CGGCTCGAAC GCCTTGGCGC AACGATTTTT
GAAGGCCAGC GCGCCGAGAA CCTCGAAGAT GCCGAGGTCG TGGTGATCTC GTCCGCGATC
AAACCCGGCA ACGCCGAACT CGACGAAGCC CGCTTGCGTG GCTTGCCGGT GGTGCGCCGC
GCTGAAATGC TGGCCGAGCT CATGCGGCTC AAGTCCAATA TTGCCATTGG CGGCACCCAC
GGCAAAACCA CCACCACCAC CATGATGGCA GAGCTGATGG TGGCGGGTGG CTTTGATCCG
ACCGTTGTGA ACGGAGGCAT CATTCATGCC TATGGGTCGA ACGCGCGGAT GGGGCAGGGC
GAATGGATGG TGGTGGAGGC CGACGAGAGT GACGGCACCT TCAACCGTCT GCCTGCCACG
ATCGCGGTTG TGACCAATAT CGACCCCGAG CACATGGAGC ATTGGGGCGA CTTTGATCGC
CTGCGCGACG GATTTTATGA ATTTGTCTCC AACCTTCCGT TCTATGGTCT CGCGGTATGC
TGTACCGACC ACGCCGAAGT ACAGGCGCTT GTTGGCCGGA TCACCGATCG CCGCGTTGTC
ACCTACGGGT TCAACGCGCA GGCTGACGTG CGCGCGGTGA ACCTCACCTA CAAAGGAGGC
GTGGCGCATT TCGACATCCT GCTGCAGGCT GAGGGTCAAA AAATCGAAGG CTGTACGCTG
CCGATGCCTG GGGATCACAA TGTCTCCAAC GCGCTCTCTG CGGTGGCCGT CTGTCGTCAC
CTCGGCATGA AGCGCGAAGA GATCCGCACA GCCCTTGCCG CCTTTGGTGG GGTCAATCGT
CGCTTTACCA AAGTGGGCGA AGTGGATGGT GTCACCATCA TTGATGATTA CGGCCATCAC
CCGGTGGAAA TTGCCGCCGT CCTCAAAGCT GCGCGACAAG CCATCGGCAC CGAGGGCGAG
GGGCGCGTGA TCGCCGTCCA CCAGCCGCAC CGCTATTCGA GGCTCTCCAA CCTCTTTGAC
GATTTCTGCG CCTGTTTCAA TGACGCCGAT GTCGTGGCCA TAGCCGAGGT GTTTGCCGCC
GGCGAAGATC CCATCGAAGG TGCGAGCCGC GACGATCTGG TGGCAGGGTT GATCCGGCAT
GGTCATCGCC ATGCCCGCGC GATCCTCAAC GAAGATGACC TGCTGCGCCT CGTGCGTGAA
CAGACGCGCC CCGGTGACAT GGTGGTGTGC CTTGGTGCAG GGACGATTTC GGCATGGGCA
AACGGATTGC CCGAGAGGCT TCGGGGGTGA
 
Protein sequence
MTPATKLPGD VGPIHFVGIG GIGMSGIAEV LLNLGYVVQG SDLKSSRITQ RLERLGATIF 
EGQRAENLED AEVVVISSAI KPGNAELDEA RLRGLPVVRR AEMLAELMRL KSNIAIGGTH
GKTTTTTMMA ELMVAGGFDP TVVNGGIIHA YGSNARMGQG EWMVVEADES DGTFNRLPAT
IAVVTNIDPE HMEHWGDFDR LRDGFYEFVS NLPFYGLAVC CTDHAEVQAL VGRITDRRVV
TYGFNAQADV RAVNLTYKGG VAHFDILLQA EGQKIEGCTL PMPGDHNVSN ALSAVAVCRH
LGMKREEIRT ALAAFGGVNR RFTKVGEVDG VTIIDDYGHH PVEIAAVLKA ARQAIGTEGE
GRVIAVHQPH RYSRLSNLFD DFCACFNDAD VVAIAEVFAA GEDPIEGASR DDLVAGLIRH
GHRHARAILN EDDLLRLVRE QTRPGDMVVC LGAGTISAWA NGLPERLRG