| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0649 |
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| Symbol | rimO |
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| ID | 4078162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 693219 |
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| End bp | 694622 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005946 |
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| Product | ribosomal protein S12 methylthiotransferase |
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| Protein accession | YP_612644 |
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| Protein GI | 99080490 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.576073 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCAGCA ACCCGCCAGA TCTCCGCCCC GACCTCGCCC CCAAACCCAC CTTTGGCACG
GCGCCCCGTC CCGACCAGCC GACCCTCGGC ATGGTCTCCT TGGGCTGCCC AAAGGCCCTG
GTGGACAGCG AACGTATCCT CACCCGCTTG CGCGCCGAAG GATATGGGAT CTCGGCGGAT
TATGCCGGCG CGGATGCGGT GATCGTCAAC ACCTGCGGCT TTCTCGACAG CGCCAAGGCC
GAGAGCCTCG AGGCGATTGG CGAAGCGCTG AAGGAAAACG GCAAGGTGAT CGTCACAGGG
TGCCTTGGTG CAGAGCCGGA CTATATCCGC GAGCACCATC CGCGCATCCT CGCCGTCACG
GGCCCGCATC AATACGAGCA GGTGCTGGAT GCGGTCCATG CGGCGGTGCC GCCCAGCCCC
GACCCCTTTG TGGACCTTCT GCCCGCCACG GGTGTGAGCC TCACGCCCCG GCATTTCAGC
TATCTGAAGA TCTCTGAGGG CTGCAACCAC AAGTGCAAGT TCTGCATTAT CCCCGACATG
CGCGGCAAAC TTGCGTCGCG CCCGGCCCAT GCGGTTTTAC GCGAGGCCGA GAAACTGGTC
ACCGCTGGCG TCCGAGAGCT TCTGGTCATC TCGCAGGATA CCTCGGCCTA TGGGCTCGAT
CGAAAATATG ACGTGAACCC GTGGAAAGAC GGCGAGGTTC GAAGCCATAT CACCGATCTG
AGCCGCGCAT TGGGGGAGCT GGCCCCCGCC GATCAGCTCT GGGTGCGGCT CCATTACGTC
TACCCCTACC CGCATGTACG CGAGTTGATC CCGCTGATGG CCGACCCTGA AAATGCTGTG
CTGCCCTATC TCGACATTCC GTTCCAGCAC GCCCACCCGG ATGTGCTCCG TCGCATGGCC
CGCCCGGCAG CGGCAGCAAA GACGCTGGAC GAAATCCGCG CCTGGCGCGC CATCTGTCCT
GACATCACCC TGCGGTCGAC CTTCATCGTC GGCTATCCAG GCGAAACAGA GGCCGAATTC
CAGCACTTGC TCGACTGGAT GGATGAGGCT CAACTGGATC GCGTGGGCTG CTTCAAATAT
GAAAACGTCG ACGGCGCCCG CTCCAATGAC TTGCCCGACC ACGTCGCGGA GGAGGTCAAG
CAAAACCGCT GGGAGCGCTT CATGGAAAAA GCACAGGCCA TTTCCGAGGC CAAACTCGCA
TCCAAAGTGG GCCAGACCCT GCAGGTGATC GTGGACGAGA TCGACGAGGA CGGGATCGCC
ACCTGCCGCA CCAAGGCGGA TGCTCCGGAA ATCGACGGCA ACCTCTTTAT CGACGAAGGC
ACCGCAAATC TGAGCGTCGG GGATCTGGTC ACGGTCGAAG TGGATGAAGC CGGCGAGTAT
GACCTTTGGG GGGCGCTGCG CTAA
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| Protein sequence | MTSNPPDLRP DLAPKPTFGT APRPDQPTLG MVSLGCPKAL VDSERILTRL RAEGYGISAD
YAGADAVIVN TCGFLDSAKA ESLEAIGEAL KENGKVIVTG CLGAEPDYIR EHHPRILAVT
GPHQYEQVLD AVHAAVPPSP DPFVDLLPAT GVSLTPRHFS YLKISEGCNH KCKFCIIPDM
RGKLASRPAH AVLREAEKLV TAGVRELLVI SQDTSAYGLD RKYDVNPWKD GEVRSHITDL
SRALGELAPA DQLWVRLHYV YPYPHVRELI PLMADPENAV LPYLDIPFQH AHPDVLRRMA
RPAAAAKTLD EIRAWRAICP DITLRSTFIV GYPGETEAEF QHLLDWMDEA QLDRVGCFKY
ENVDGARSND LPDHVAEEVK QNRWERFMEK AQAISEAKLA SKVGQTLQVI VDEIDEDGIA
TCRTKADAPE IDGNLFIDEG TANLSVGDLV TVEVDEAGEY DLWGALR
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