| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0630 |
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| Symbol | |
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| ID | 4076117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 667574 |
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| End bp | 668647 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005927 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_612625 |
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| Protein GI | 99080471 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0232449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.116732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGA CGTCAATCCG GGCGGTGATG CTTGGGGCGA TTTTGGCGAC CCCGATGGCG
GCTGGCGTAG CCGCACAGGC GCAAGACGCA ACGCCGGAAC AGGTGCTTTT GAAACCTGTG
AAGCTGATGA CCGCCAATGG TGGCTCGGCG CCGCTGGAGC GGAGCTTTTT TGGCCAGGTA
GCGGCCAAGG AAACCGTTGA TCTGGCCTTT CAGGTGGGTG GGCAAGTGTT GAAGCTTCCG
ATTACCGAAG GCGACGAGAT CCCCAAGGGC GGGCTGATCG CGCAGCTGGA TCTGGAGACG
TTTCAGCTTC AACTCGAGCA AGCGGTGCTG AATAAACAGC AAGCGGATCG CACCAAGGAA
CGCAACGCGC GCCTCGCGGG TACCGTGAGC CAGGTGGCGA TTGAAGATGC CGAAACCGCC
GCCGGGCTGG CAGAGGTGGC CTTGCGCACG GCGCAGACGA ACCTCGATCA TGCAACGCTC
TATGCACCGT TTGATGCCCT GGTGGCGCGG CGCGAGGTGG CGCAGTTTTC TACTGTTTCT
GCGGGGACGC CAATTGCGCG CCTGCATGAT ATGTCCGAAT TGCACGTCGA AATCGACGTG
CCAGAGCTTC TGTTCCAGAA GGCGAACGAG AGCGATGCGT TCGAAATCGT GGCCTCTTTC
CCCGGAAGCA GCAAAGAATA CCCGCTTCAG ATCGTCGAAT ATGTCGCCGA AGCCTCTGCC
GTGGGGCAGA CCTACCGCGT GACCCTTTCG ATGGAGCCGC CGGAAGATCG TCACATCCTG
CCGGGGGCCT CGACCACCGT GAGCGTGCGC GTCTCGACCG GCCTGCATCG TATCGCACTT
CCGGTGACCG CCATCGTGAC CACGCCAGAA GGCAAGACCG GTGTGATGGT CTTTACCCCC
ACGGGCGCGG ACGCGGGCTC GGTGACATGG ACCGAAGTAG AGATCGCGCC CAACCAGTTC
GGCACGTTTG ATGTGCTCTC CGGTGTGGAG GACGGCGACG AAGTCGTTCT CACCGGGGGC
GCCGCGCTCA AGGACGGGCA GGCGGTGCGC CGCTTTGTCG GTTTCAGCAA TTGA
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| Protein sequence | MKMTSIRAVM LGAILATPMA AGVAAQAQDA TPEQVLLKPV KLMTANGGSA PLERSFFGQV
AAKETVDLAF QVGGQVLKLP ITEGDEIPKG GLIAQLDLET FQLQLEQAVL NKQQADRTKE
RNARLAGTVS QVAIEDAETA AGLAEVALRT AQTNLDHATL YAPFDALVAR REVAQFSTVS
AGTPIARLHD MSELHVEIDV PELLFQKANE SDAFEIVASF PGSSKEYPLQ IVEYVAEASA
VGQTYRVTLS MEPPEDRHIL PGASTTVSVR VSTGLHRIAL PVTAIVTTPE GKTGVMVFTP
TGADAGSVTW TEVEIAPNQF GTFDVLSGVE DGDEVVLTGG AALKDGQAVR RFVGFSN
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