| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0629 |
|---|
| Symbol | |
|---|
| ID | 4076116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 667095 |
|---|
| End bp | 667577 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638005926 |
|---|
| Product | MarR family transcriptional regulator |
|---|
| Protein accession | YP_612624 |
|---|
| Protein GI | 99080470 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0229428 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.101426 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTCG ACCATTCAGA CATCTGGAAG CTTTACACGC CAGAAGTGCA GGCCATGATG
GGGGTTTTTG CGCTTCACTG GCAGTTGGAG CAACGTCTGA ACGATGTTTG TCACGAGGGG
CAATTGGGCC GGTCGGAGCA TCAATTGTTG CTTATTCTTG CGCAACCCCG TCGCATGGGG
GAGCTTGCGC GGCTGACGCA CAAGACGCCG TCTGCGATGA CGGCTGCTGC GGCTGTCCTG
GAACAGTCCA ATCTGATCCG CCGGGTAAGG GACCCCGGGG ACGGAAGAGC TTGGCTACTG
GAGTTGACAG AAGAGGGGCG CAGGCGTCGG GCACAATTGG TCGATGCGGC ATCCGGGATA
TTTTACGAAA CGTCGGGCCT CACGCGGGAA GAAGCAGAAA TCCTCGCCCG GCTCGCACAA
AAAATTCACA ATAAGGCCGT TCAGTCGGGC GCTGTGGCAC CCTGTGAAGG AGATCAAACA
TGA
|
|---|
| Protein sequence | MTVDHSDIWK LYTPEVQAMM GVFALHWQLE QRLNDVCHEG QLGRSEHQLL LILAQPRRMG
ELARLTHKTP SAMTAAAAVL EQSNLIRRVR DPGDGRAWLL ELTEEGRRRR AQLVDAASGI
FYETSGLTRE EAEILARLAQ KIHNKAVQSG AVAPCEGDQT
|
|---|
| |