| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0625 |
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| Symbol | |
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| ID | 4078138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 662962 |
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| End bp | 663930 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005922 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_612620 |
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| Protein GI | 99080466 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.464742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCTT CAGAACGTCG GCGCCTGTTG ATCACGCGCC CCATGACCGC AGCGGTTGAG
GCGCGCGCGC GCGCAGAACT CGACGTGGAG ATCCGTCAAG AGACCACGCC TCTGAGCCCA
GAGGAAATGA GACAGAGCCT CGGGGCGTTT GATCTTGTGA TGCCCACGCT CGGAGATGCC
TATTCGGCGG ATGTCTTTGC AGCGGTGCCA CAGCCTCGGT GCCGTCTGCT CGCTAATTTT
GGGGTTGGCT TCAACCATAT TGATGCTGAA GCGGCGCGGG CGGCCGGGGT GGAGGTCACC
AATACCCCCG GTGCCGTTAC GGATGCCACG GCCGACATTG CATTGACGCT GATGCTGATG
ACCGCGCGAC GGGCTGGCGA GGGCGAGCGG CTGGTGCGCT CGGGGCAGTG GCAGGGCTGG
CACCCGACAC AGATGCTCGG GCTGCATCTG TCGGGCAAGC GGCTTGGTGT GGTTGGGCTC
GGACGGATTG GCGATGCCAT CGCGCGACGC GCACATTTCG GCTTTGGCAT GGAGATTTCC
TATCTCGCGC GCAGCGACAA AGAAACTGGC TATCCTGCCA CGCGGGCCTC GAACCTGATC
GAGCTCGCCG CGTCGGTCGA TATGCTTGTT GTGGCGGTGC CCGGAGGTGC GGAAACCCGG
CATCTGATCA ATGCGGACGT GCTGGCAGCG CTGCCGTCTC ATGCGCATCT GGTCAATATC
GCGCGCGGCG AGGTGGTCGA TGAGGCCGCT TTGATTACCG CTTTGCAAGC GGGTCAGATC
GCGGGCGCAG GGCTTGATGT CTATGAGTTT GAGCCAAAGG TGCCAGCGGA GCTCAGAGCT
ATGGAGCAGG TGACGCTGCT GCCGCATTTG GGCACGGCCA CCGAAGAGGT TCGCAGCGCC
ATGGGGCATA TGGCGCTGGA CAACTGCGTG GCATTTCTGA CCGGGGCGCC TTTGCCAAAC
CCTGTGTGA
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| Protein sequence | MAASERRRLL ITRPMTAAVE ARARAELDVE IRQETTPLSP EEMRQSLGAF DLVMPTLGDA
YSADVFAAVP QPRCRLLANF GVGFNHIDAE AARAAGVEVT NTPGAVTDAT ADIALTLMLM
TARRAGEGER LVRSGQWQGW HPTQMLGLHL SGKRLGVVGL GRIGDAIARR AHFGFGMEIS
YLARSDKETG YPATRASNLI ELAASVDMLV VAVPGGAETR HLINADVLAA LPSHAHLVNI
ARGEVVDEAA LITALQAGQI AGAGLDVYEF EPKVPAELRA MEQVTLLPHL GTATEEVRSA
MGHMALDNCV AFLTGAPLPN PV
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