| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0600 |
|---|
| Symbol | |
|---|
| ID | 4078638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 640633 |
|---|
| End bp | 641526 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638005897 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612595 |
|---|
| Protein GI | 99080441 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.172684 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTGA TCGCCCTGAC CACTCTTGTG ATGATCGCCT TTGCGGCGAA CTCAATTCTC
GGGCGCTGGG CCATTGGGCC GGGTCACATG GATGCGACTG GATTTGGCCT GCTGCGGCTG
GCATCGGGGG CAGCGATGCT CTGGGCCTTG TGCGCCTTAC AGGGGCGGCG CCCGCGTGAA
GCCTGGCGCC GGTCGCTGGC AGGGGGCGCC TCGCTCACCC TCTATATGGT AGGATTTTCA
ATGGCCTACG TTGCGCTGGA TGCTGGTTTG GGGGCGCTGA TCCTGTTTGG GGTCGTGCAG
ATCTCGATGT TCGGATGGAG TCTGCTGTCC CGTCAGCCGG TGTCGATGCT GCAGATTGCA
GGGGCGTCCA TCGCTCTTGC GGGGCTTGCA TATGTGGTGT GGCCCAGCGC AGAGATCGAG
GCGCCACTCT GGGCCGTGCT GTTGATGGGG GCAGGGGGGC TCGGTTGGGG GATCTACAGC
CTGGTTGGCC GTGCGGCGCA GGTGCCGCTG GCGGCCAGTG CAGTGAACTT CTTGTTGGCC
ACGGGCCTGA TCCTGCCCTT TGTCTGGCTC GCGGGGGGCG GCACGGTGAT CTCGGTGTTT
GGCTGCGTTC TGGCCGTCGT GTCGGGCGCT GTCACCTCGG GACTGGGCTA TGCGCTCTGG
TATCGCGTCC TGCCGCAGCT GTCCGCCCCG GTTGCGGCCA CAGTTCAATT GAGCGTTCCG
GTTATTGCGA TACTTTTCGG GGCGCTGATC CTTGGTGAAC CTGTCGGAGC GCGTTTGATG
CTTGGTACAT TCGTTGTGCT TGGAGGGATC GGCTTGGTGA TCCTTTGCCC CCGCCCGCAA
CCGAGGCCTC GCAAAGACGC GCAGGGGCTT TCGGGATCCC CGCCGAACGC CTAA
|
|---|
| Protein sequence | MRLIALTTLV MIAFAANSIL GRWAIGPGHM DATGFGLLRL ASGAAMLWAL CALQGRRPRE
AWRRSLAGGA SLTLYMVGFS MAYVALDAGL GALILFGVVQ ISMFGWSLLS RQPVSMLQIA
GASIALAGLA YVVWPSAEIE APLWAVLLMG AGGLGWGIYS LVGRAAQVPL AASAVNFLLA
TGLILPFVWL AGGGTVISVF GCVLAVVSGA VTSGLGYALW YRVLPQLSAP VAATVQLSVP
VIAILFGALI LGEPVGARLM LGTFVVLGGI GLVILCPRPQ PRPRKDAQGL SGSPPNA
|
|---|
| |