| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0590 |
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| Symbol | |
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| ID | 4078628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 630062 |
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| End bp | 632194 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638005887 |
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| Product | DEAD/DEAH box helicase-like |
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| Protein accession | YP_612585 |
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| Protein GI | 99080431 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00331406 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCGATACG AACGGACCCC CCACTTGATA CCCACCTTGC AGCAGGCGCT GGAGCGCCGT
GGATACACGT CTCTCACCCC TGTTCAGGAG GCGGTCTCGA ACCCCGAATT GGCGGGCGCG
GACCTCTTGG TATCTGCTCA GACCGGCTCT GGCAAAACCG TAGGTTTCGG GCTTGCGATT
GCGCCCACCA TTCTGGGCGA GGACGGCACA TTTGAACGCG CCGCCAGCCC GTTGGCTCTG
GTGATCGCAC CGACCCGCGA GCTCGCGCTG CAGGTGAAAC GCGAGTTGAG CTGGCTCTAT
GGTGACGCGG GGGCTGTCCT GGCCTCTTGT GTTGGCGGCA TGGACATGCG CGACGAACGC
CGCGCATTGG AGCGGGGGGC GCATATCGTT GTCGCCACTC CGGGCCGTCT GCGCGACCAC
ATTACCCGTG GCTCCATCGA CCTGAGCGGC GTGGCCGCTG TTGTGCTGGA CGAAGCGGAC
GAGATGCTGG ATCTCGGCTT CCGCGAGGAT CTCGAGTTCA TCCTCGAAGA GACCCCCGAA
GACCGCCAGA CGCTGTTGTT CTCGGCGACG GTGTCCAAAC CCATCGCCGC GTTGGCGCAG
ACCTATCAAA ACGATGCGCA GCGGATCTCC ACGATCAACA AATCCGAACA GCACAGCGAC
ATCTCTTATC TCGCACATGT GGTTGCACCC CATGACATCG AGAACGCGAT CATCAACGTG
CTGCGCTTTC ACGAAGCGCC CAACGCCATT GTCTTTGCCA ATACCCGCGC AGCGGTGAAC
CGGTTGCTGA CCCGTTTGTC GAACCGTGGT TTTCAGGTCG TCGCACTCTC GGGCGAGCTG
TCGCAATCCG AGCGCGCCGG TGCCCTGCAG GCCATGCGCG ATGGCCGCGC CCGGATCTGC
GTCGCCACCG ATGTGGCCGC GCGCGGGATT GACCTGCCGA ACCTCGACCT GGTGGTGCAT
GCCGACCTTC CATCGAGCCA TGAGACCCTT CTGCACCGTT CGGGCCGGAC GGGCCGCGCG
GGCCGCAAAG GCGCCAGCGC CCTGATGGTC ACGCCGCGCT CGGTACGCAA GGCAGAGCGC
CTCCTGCGCG AAGCCAAGCT TTCGGCCGAA TGGATCGATG CCCCCTCCGC CGATGAGGTT
CGCGGCCGCG ATCTGGAGCG AATGCTCTCT GATACGGTCT GGACCGAAGA GGCGCCCGAA
AGCCAGCAGG AAACCCTCGC CAAGCTCGTC GAGAGTTTCA GCCCGGAACA ACTGGCTGCA
GGGTACCTGC GGCTGTGGTC CGCTGCCCGC TCCGCGCCCG AAGAACTCAC GGACGTGGCC
GCAATGGACA CGCGGAAGAA AAAAGAAGAC CGCGCGCCCT TCGGACCGTC TGTCTGGTTT
GCCATCGACG GTGGCCGCGA TGCCGGTGCC GACCCGCGTC GCCTACTGCC GATGCTCTGC
AAGGCCGGTG GGATCGACAA AACCGCCATC GGCGCCATTC GCATCGTGGG CGACAAGAGC
TATGCCGAGA TCGCCGAGGA CAAGGTCGAA GGCTTCATGG CAACCCTTGG CGGTGAGATG
GCGCTGGATG ATGGTTCTGC ATTGGAGCGT CTGAGCGAAG CGCCGAACCT GCCAGAGCGC
AGCAAGCCCC CCTTCCGCAA AGGCGGCGGC GGTGGACGCG GTGGCTTTGG CGGCGGCAAG
CCCGGCGGCT ACAAGGGCGA GCGCAAAGGC GGCGGCGATT TCAAAGGCGA CCGCAAGCCT
TACCGCGATC GTGACGGCGA CGCTGACCGT ACGGTCAAAC CACGTGCGGC CAAGCCGCGC
CCCCATGGGG ACAAACCTGC TTTTGACAAA CCCCGCGGTG ATCGCTCGGA AAAGGGCAAG
TTTGATAAAC CCCGCTCAGA CAAGCCGAGA GGGGACAAAC CCTGGGGCGA CAAGCCCCGG
GGGGATAAGC CCCGGGGGGA TAAGCCACAC AGAGACAAGC CACACGGAGA CAAGCCGCGC
GGCGATAAGC CCAAATTCGA CAAGCCCCGC GCGTCCAAAC CCAAAGGGCC CCCGCCCCCA
AAGGGCAAAC CCAACAGCAA AAAGAACAAG GCGCGCCGGT CTGACGCCAG CAACACATCC
AAACGCTTCA CACCGCCGGG CCGCAAAGCC TGA
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| Protein sequence | MRYERTPHLI PTLQQALERR GYTSLTPVQE AVSNPELAGA DLLVSAQTGS GKTVGFGLAI
APTILGEDGT FERAASPLAL VIAPTRELAL QVKRELSWLY GDAGAVLASC VGGMDMRDER
RALERGAHIV VATPGRLRDH ITRGSIDLSG VAAVVLDEAD EMLDLGFRED LEFILEETPE
DRQTLLFSAT VSKPIAALAQ TYQNDAQRIS TINKSEQHSD ISYLAHVVAP HDIENAIINV
LRFHEAPNAI VFANTRAAVN RLLTRLSNRG FQVVALSGEL SQSERAGALQ AMRDGRARIC
VATDVAARGI DLPNLDLVVH ADLPSSHETL LHRSGRTGRA GRKGASALMV TPRSVRKAER
LLREAKLSAE WIDAPSADEV RGRDLERMLS DTVWTEEAPE SQQETLAKLV ESFSPEQLAA
GYLRLWSAAR SAPEELTDVA AMDTRKKKED RAPFGPSVWF AIDGGRDAGA DPRRLLPMLC
KAGGIDKTAI GAIRIVGDKS YAEIAEDKVE GFMATLGGEM ALDDGSALER LSEAPNLPER
SKPPFRKGGG GGRGGFGGGK PGGYKGERKG GGDFKGDRKP YRDRDGDADR TVKPRAAKPR
PHGDKPAFDK PRGDRSEKGK FDKPRSDKPR GDKPWGDKPR GDKPRGDKPH RDKPHGDKPR
GDKPKFDKPR ASKPKGPPPP KGKPNSKKNK ARRSDASNTS KRFTPPGRKA
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