| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0589 |
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| Symbol | |
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| ID | 4078627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 629035 |
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| End bp | 629910 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005886 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_612584 |
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| Protein GI | 99080430 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01459] HAD-superfamily class IIA hydrolase, TIGR01459
[TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00195304 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCAGA TCATCTCCGC CCTTTCCGAG GTTTCAGACC GATACAAGGC TCTGTTCGTG
GATCTCTGGG GCTGCGTTCA CAACGGGATC ACGGCCTACC CGGACGCTGT CGCGGCCCTT
CAGGCCTACC GCAAATCCGG CGGAGTGGTG GTACTGGTCA CCAACTCGCC CAAACCCCGC
GCAGGGGTGG CAGAGCAACT GAGCCAGTTC GGCGTCCCAG ATGACGCCTA TGACACCATC
GCTACCTCTG GCGATTCCGC GCGCGCGGCG ATGTTCACAG GTGCTGTCGG TGAAAAGGTC
TACTTCATGG GCGAATGGGA GCGCGATGCC GGCTTTTTTG AGCCAATGAA GGTTATCCAC
GAGCCCATTG AGATCACCCG CGTCCCGCTT AAGGAAGCCG AAGGGATCGT CTGCTGCGGT
CCCTTCGACA CCTTGGCCGA CCCGGAGGTG AACCGCGCCG ATTTTCTCTA TGCCAAACAG
ATGGGTATGA AGCTTCTTTG CGCGAATCCG GATATTATCG TCGACCGTGG CGAGGTACGC
GAATGGTGCG CTGGGGCCTT GGCCAAACTT TACACCGAAA TGGGGGGCGA GAGCCTCTAT
TTCGGCAAGC CGCATCCGCC GATCTACGAT CTCGCGCGTC GTCGCCTGAC GGAAATTGGC
CACGATGTTT CGGACCGCGA CATTCTCGCA ATTGGCGACG GGCCGCACAC CGACATCTCA
GGCGGCATGG GTGAAGGGGT GGACACGCTG TTCATCACCG GCGGCTTGGC CGCAAAAGAC
ACCCAAACGG CTCATCAGCC CGAGCCTGCT GCACTGGAGG CGTATCTCGC GCAGGAACAG
ATCGCGCCCA CCTACAGCAT CGGCTTTCTG CGCTAA
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| Protein sequence | MSQIISALSE VSDRYKALFV DLWGCVHNGI TAYPDAVAAL QAYRKSGGVV VLVTNSPKPR
AGVAEQLSQF GVPDDAYDTI ATSGDSARAA MFTGAVGEKV YFMGEWERDA GFFEPMKVIH
EPIEITRVPL KEAEGIVCCG PFDTLADPEV NRADFLYAKQ MGMKLLCANP DIIVDRGEVR
EWCAGALAKL YTEMGGESLY FGKPHPPIYD LARRRLTEIG HDVSDRDILA IGDGPHTDIS
GGMGEGVDTL FITGGLAAKD TQTAHQPEPA ALEAYLAQEQ IAPTYSIGFL R
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