| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0582 |
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| Symbol | |
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| ID | 4076147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 619950 |
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| End bp | 621050 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 638005879 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase |
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| Protein accession | YP_612577 |
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| Protein GI | 99080423 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.764732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000507477 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGACCTT TCCCTCATGA TGCCCCCAAA TCGGTGATCA GCGCTGAGAA CCCGGCCGGA
ACCGATGGAT TTGAATTTGT AGAGTTTGCC AGCCCGAACC CCGAAGAACT GCGCGAGCTC
TTTGCCAAGA TGGGGTACGA GTTGGTCGGA CGTCACAAGA CCAAGCCGGG TATCGAGCTT
TGGCAGCAGG GGGACATCAC CTACATCCTC AATGCCGAGA AAGGCTCTTT TGCGGAAAAG
TTCGTTGAAC TTCACGGCCC CTGTGCCCCC TCGATGGGCT GGCGTGTGGT CGATGCGCAA
AAGGCGTTTG AGCACGCGGT GGCCAAGGGG GCGGAGCCCT ATGAAGGCGA TGACAAAACA
ATGGATGTGC CTGCAATCAA AGGGATTGGC GGCTCGCTCA TCTACTTCAT CGACCAGTAT
TACGACACCT CGCCCTATAA CGAGGAATTC GAGTGGCTGA AGCAGTCCAA ACCGCGCGGC
GTCGGTTTTT ATTACCTCGA TCACCTCACG CACAATGTCT TCAAAGGCAA CATGGACAAG
TGGTTCCACT TTTATGGCGA CCTGTTCAAC TTCAAGGAAA TCCGGTTCTT TGACATTCAG
GGCAAGTATA CCGGCCTCTT CAGCCGTGCC TTGACCTCGC CTTGCGGCCG CATTCGCATT
CCGATCAACG AGGACCGTGG CGAGACCGGG CAGATCGTTG CCTATCTCAA GAAGTACAAT
GGCGAAGGCA TCCAGCACAT CGCTGTGGGC GCGCGTGACA TCTATGATGC CACTGACGAG
ATCTCCGAAC GTGGCATCCA GTTCATGCCG GCCCCGCCTG CAACCTATTA CGACATGAGC
CACGACCGTG TCCAAGGCCA CGAAGAGCCG CTGGATCGTA TGAAAAAGCA CGGCATCCTC
ATCGACGGCG AAGGCGTGGT GGACGGGGGC GAGACACGCA TCCTGCTGCA GATCTTCTCA
AAAACGGTGA TCGGGCCGAT CTTCTTTGAG TTCATCCAGC GCAAAGGCGA TGACGGCTTT
GGCGAGGGCA ACTTCAAGGC GCTCTTTGAA TCGATCGAAC AGGAGCAAAT CAACAACGGT
GAAATCTCCG CTGCCGAGTG A
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| Protein sequence | MGPFPHDAPK SVISAENPAG TDGFEFVEFA SPNPEELREL FAKMGYELVG RHKTKPGIEL
WQQGDITYIL NAEKGSFAEK FVELHGPCAP SMGWRVVDAQ KAFEHAVAKG AEPYEGDDKT
MDVPAIKGIG GSLIYFIDQY YDTSPYNEEF EWLKQSKPRG VGFYYLDHLT HNVFKGNMDK
WFHFYGDLFN FKEIRFFDIQ GKYTGLFSRA LTSPCGRIRI PINEDRGETG QIVAYLKKYN
GEGIQHIAVG ARDIYDATDE ISERGIQFMP APPATYYDMS HDRVQGHEEP LDRMKKHGIL
IDGEGVVDGG ETRILLQIFS KTVIGPIFFE FIQRKGDDGF GEGNFKALFE SIEQEQINNG
EISAAE
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