| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0578 |
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| Symbol | cobT |
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| ID | 4076143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 614997 |
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| End bp | 616007 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638005875 |
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| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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| Protein accession | YP_612573 |
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| Protein GI | 99080419 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000265143 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000251354 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCTGCCAG ACCTGACGAC GCTTTCTGAT TTCCGTAATG CTCTGGCGCA AGCGCCCGGC
GCCGATGCTG ACGCGCGCGC GGCCTGCGAG GACCGGAACG GGCAATTGAC CAAACCGCCT
GGGGCGCTGG GGCAGCTTGA AGAGATCGCG ATCTGGTACG GCAGTTGGCG TGGAACGGCG
CGTCCCGAAG TGCGCGCGCC GCAAGTCATT GTCTTTGCCG GAAACCATGG CGTCACCGCG
CGTGGGGTCT CGGCCTTTCC GGCCGAGGTC ACGGTGCAGA TGGTTGCCAA TTTCAAGGCA
GGCGGCGCGG CGATCAACCA GTTGGCCCAG CTCGCTGATG CGCGCATGGA TGTCCATGCG
CTGGAGCTGG ATCGCCCGAC GGCTGATTTC ACGCAGGGCC CCGCGATGAG CGAGGAAGAC
CTGCTGGCCG CGCTGCGCAC TGGCTGGAAT GCGGTCGATC CGGCGAGCGA TGTGCTCGTG
GTGGGCGAAA TGGGGATCGG GAACACGACC TCTGCGGCTG CGATCTGCCA TGCGCTTTAT
GGCGGTGAGC CGGGTGATTG GACGGGCAGG GGCACCGGCG TTGACGACGA GGGCCTTGCC
CTGAAGACGG CTGTTATCGC CGAGGCGGTC GCGCTGCACG GCAGCCGCGA CGGGTTGGAG
GTTCTGCGTT GCCTTGGCGG GCGTGAGATC GCAGCAATGG CCGGGGCGAT CGCTGCGGCG
CGAGTGCTGC GCATTCCGGT TATTCTGGAT GGGTTCATCT GCTGTGCCGC TGCGGCCTCT
CTGGCGCGCC TGCACGATCA GGCGTTGGAT CACGCTGTCG CAGGCCATCA AAGCGCCGAG
GGCGGTCATC AGGCATTGCT GGCGAGACTG GGCAAGGCAC CGCTGCTGTC GCTGGGGCTG
CGCCTTGGAG AGGGCTCTGG GGCGGCACTT GCAATCCAAG TGCTCAAAGG TGCGCTGGCC
TGTCATAGTG GCATGGCCAC CTTTGCCGAA GCCGGAGTAT CGGACGGCTG A
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| Protein sequence | MLPDLTTLSD FRNALAQAPG ADADARAACE DRNGQLTKPP GALGQLEEIA IWYGSWRGTA
RPEVRAPQVI VFAGNHGVTA RGVSAFPAEV TVQMVANFKA GGAAINQLAQ LADARMDVHA
LELDRPTADF TQGPAMSEED LLAALRTGWN AVDPASDVLV VGEMGIGNTT SAAAICHALY
GGEPGDWTGR GTGVDDEGLA LKTAVIAEAV ALHGSRDGLE VLRCLGGREI AAMAGAIAAA
RVLRIPVILD GFICCAAAAS LARLHDQALD HAVAGHQSAE GGHQALLARL GKAPLLSLGL
RLGEGSGAAL AIQVLKGALA CHSGMATFAE AGVSDG
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