| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0573 |
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| Symbol | |
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| ID | 4076138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 609547 |
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| End bp | 612501 |
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| Gene Length | 2955 bp |
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| Protein Length | 984 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005870 |
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| Product | helicase-like |
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| Protein accession | YP_612568 |
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| Protein GI | 99080414 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4581] Superfamily II RNA helicase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.013088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000121316 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGACTG CATCCCGGGT TGTGGCCGTC CTCGGCCCAA CCAACACAGG CAAGACCCAC
TACGCGATTG ATCGTATGCT CGGCTATCGA ACCGGGGTCA TGGGGTTTCC GCTGCGTCTG
CTTGCGCGTG AGGTCTATGA CAAGATCGTC AAGCTGCGCG GCCCGTCGGT GGTTGCGCTG
GTCACCGGCG AAGAGCGTAT TGTCCCGCCC CGGGCGCAGT ATTGGATCTG CACCGTTGAA
GCCATGCCAG AAGGTATGGG CTGCGATTTC CTTGCGATCG ACGAAATCCA GCTCTGTGCC
GACCCGGAAC GCGGTCATGT GTTTACGGAC CGCCTGTTGC GGTCGCGTGG GATGAAAGAG
ACGCTGTTTC TGGGGGCTGA TACCATGCGC GGGCCAATCG CCGCGCTGGT GCCGGGCGTT
GAATTTGTCC GTCGCGAGCG AATGTCAGAA CTGGTCTATG CCGGTTCCAA GAAGATCTCC
CGCATGCCGC CACGCACCGC CATCGTGGGC TTCAGCGTCG ACAGCGTCTA TGCCATTGCA
GAGCTGATCC GCCGTCAAAA AGGCGGTGCT GCGGTGGTAA TGGGAGCCCT GTCGCCAAGA
ACTCGCAACG CGCAGGTCGC GCTCTACCAA AATGGCGAGG TGGATTATCT CGTGGCCACG
GACGCGATTG GCATGGGGCT CAATCTCGAC GTCGATCACG TCGCCTTCTC GGCGACCTCC
AAATTCGACG GCCGCCGGAT GCGCCCGCTA GCCCCCAATG AGCTGGCACA GATCGCCGGA
CGCGCGGGGC GCGGGATGAG CCATGGCAGC TTTGGTGTCA CTGGCGATGC ACGCCCGCTC
GAGGAGGGCG TGGCGCAGGC GATCATGGAC CACCGCTTTA CGCCGCTGCA AAAGCTGAAC
TGGCGCTCTG CCGATCTACG TTTTGGCTCG ATCGACGCCC TGATCCATTC GCTTGAGGCC
AGCCCGAACC ATGAGGTTCT GCTGAAGGCG CGCGAGGCCG ATGATCTGAT GGTGCTGAAA
TCGCTGGCCC AGGACGGCGC CATTCGGGAT CGCGCCACGG ATGCGGCGTC TGTGCGCCTG
TTGTGGGATG TCTGCCGAAT TCCGGACTTT CGGGGCATCA GCCATGCCGA GCACGCTTCG
CTCCTGAGTG GCATATACGG CTACCTGCAC CAAGGTGGTG TGGTCCCGGA TGATTGGTTT
GCGCGGCAAA TTCGTCGTAT TGATCGAACC GAAGGCGATA TTGACACATT GTCGAAACGC
TTGGCGTTTA TTCGCACATG GACCTATGTT GCGCAGCGAA ACGGCTGGTT GCGTGACGAA
AGTCATTGGC GGGAAGAGAC CCGCACTGTA GAAGACAGGT TGTCCGACGC TTTGCACGCG
CGTCTGACGC AACGATTTGT GGACCGGCGC ACATCCGTTT TGTTGCGGCG GCTCAAACAG
AAGGAGGCCC TTTTGGCCGA AGTAAATGAC AAGGGTGAAG TGACCGTCGA AGGCGAATTC
GTCGGTAAGC TTGAAGGCTT CCGGTTCTCA CCGGACAAAA CCGCGCAAGG CGCTGAAGCA
AAGGCACTGA AGTCTGCGTC CTTGCAAGCG CTGGCGCCGC AGTACCACCT GCGCGCGGAC
CGGTTCTACA ACGCCCCCGA TACTGAAATT GATTTCACCG ATCAGGGTGG CCTGATGTGG
GGTGAGCATG CGGTTGGCAA ACTGGTTGCC GGTGCCGATG CGCTGTCCCC GCAGATCGAG
GTTTTTGTCG ATGAGACCGC AGGCCCGGAT GTGGCCCAGA AGGTCGAGCG CCGCCTGCAG
CATTTCATCT CGCGCAAGGT TCAGGCCCTT TTTGAGCCCC TTATCGCCCT GCAAAAGGAC
GAAGCCCTCA CCGGGCTTGC CCGTGGGTTT GCGTTCCGCA TGGTCGAAGC GCTGGGCATT
CTTCCGCGCG CGGGCGTGGC GCAGGAAGTC AAGGACCTGG ATCAGGATGC GCGTGGCGCG
CTGCGCAAAC ATGGCATCCG CTTTGGCCAG TTCACGATCT TTATGCCCGC CCTGCTGAAG
CCCGCTCCGA CGCGTCTGCG TCTGTTGTTG TGGTCGCTGG CGAACGGCCT GCAGGAATTC
CCCGAGGCAC CGCCTCCGGG ACTGGTGACT GTGCCGTCCA TGCCCGAAGC GCCTGAGGGC
TATGACACGA TGGCCGGCTA TCGTGCGGCG GGTCAACGGA TGATTCGCAT CGATATGCTG
GAACGCCTGG CCGATCTGCT GCGAAATGAG GACAGCCGCG GAGGCTTTGA AGCCAAACCC
GACATGCTGT CGATCACCGG CATGACGCTT GAGCAGTTCG CCGACCTGAT GCAGGGCCTC
GGCTATCGTG CAGAGAAAGG CGAACGCGCC AAGGTCAAGG CGGTCGACGC AGTTGTGACC
GAAGGCGGAA CGCCTGCAGC GGATCAGCCT GTGATGGATG CAGCTGCCGA CGCTGAGAAC
ACCCCGGCCG CAGCACCTGC TGAGACCACG CCCGATGAGG CAGCCGCGGA TGTGCTCGCA
GGCACCTCGG AGATCGTGGA CGAGGGTGTC GCGCCAGTGG CAGCCGGGCC CGCCGAGAGC
TCTGCGGACG AGCCGATTGC AGAGACTGCT GAGGCGGAGA CCGCTGTCGG TGCTGCAGCG
GACGCAACCG TTGAAGAGCC CGAGATCGAG GTGTTCTACA CCTTCACATG GGGCCGCAAC
ACGCGTCAGG GCAACGCAGG CCGTGGCCAG CGTCGCGGCG AAGGCCGGGG GCCCAAGGCC
GATGGTGCCG GACGTGGCAA GCCGCGCGGT GGCAAGCCTC AGGGCAAGCC CGGTGGTAAA
AAGGGCGGCC GCCCGGATCG CGGCGGCGAC AAGGGGAGCA AGACCTACTC TGCGCGTCCT
CCGAAGAAAG AAAAGCAGAT CGACCCCGAC AATCCCTTTG CCGCAGCTCT CATGGGGCTG
AAGCAGGGCG ATTGA
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| Protein sequence | MTTASRVVAV LGPTNTGKTH YAIDRMLGYR TGVMGFPLRL LAREVYDKIV KLRGPSVVAL
VTGEERIVPP RAQYWICTVE AMPEGMGCDF LAIDEIQLCA DPERGHVFTD RLLRSRGMKE
TLFLGADTMR GPIAALVPGV EFVRRERMSE LVYAGSKKIS RMPPRTAIVG FSVDSVYAIA
ELIRRQKGGA AVVMGALSPR TRNAQVALYQ NGEVDYLVAT DAIGMGLNLD VDHVAFSATS
KFDGRRMRPL APNELAQIAG RAGRGMSHGS FGVTGDARPL EEGVAQAIMD HRFTPLQKLN
WRSADLRFGS IDALIHSLEA SPNHEVLLKA READDLMVLK SLAQDGAIRD RATDAASVRL
LWDVCRIPDF RGISHAEHAS LLSGIYGYLH QGGVVPDDWF ARQIRRIDRT EGDIDTLSKR
LAFIRTWTYV AQRNGWLRDE SHWREETRTV EDRLSDALHA RLTQRFVDRR TSVLLRRLKQ
KEALLAEVND KGEVTVEGEF VGKLEGFRFS PDKTAQGAEA KALKSASLQA LAPQYHLRAD
RFYNAPDTEI DFTDQGGLMW GEHAVGKLVA GADALSPQIE VFVDETAGPD VAQKVERRLQ
HFISRKVQAL FEPLIALQKD EALTGLARGF AFRMVEALGI LPRAGVAQEV KDLDQDARGA
LRKHGIRFGQ FTIFMPALLK PAPTRLRLLL WSLANGLQEF PEAPPPGLVT VPSMPEAPEG
YDTMAGYRAA GQRMIRIDML ERLADLLRNE DSRGGFEAKP DMLSITGMTL EQFADLMQGL
GYRAEKGERA KVKAVDAVVT EGGTPAADQP VMDAAADAEN TPAAAPAETT PDEAAADVLA
GTSEIVDEGV APVAAGPAES SADEPIAETA EAETAVGAAA DATVEEPEIE VFYTFTWGRN
TRQGNAGRGQ RRGEGRGPKA DGAGRGKPRG GKPQGKPGGK KGGRPDRGGD KGSKTYSARP
PKKEKQIDPD NPFAAALMGL KQGD
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