| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0571 |
|---|
| Symbol | |
|---|
| ID | 4076136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 608489 |
|---|
| End bp | 608803 |
|---|
| Gene Length | 315 bp |
|---|
| Protein Length | 104 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638005868 |
|---|
| Product | sterol-binding |
|---|
| Protein accession | YP_612566 |
|---|
| Protein GI | 99080412 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3255] Putative sterol carrier protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00913104 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000396662 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACC ACCAAGGAAA GACGACAATG AGCGACACAC TGGAACAGGC AGCCGCCAAG
CTGAACGAAA AAATGGATGG TGGCTTTGAC AGCTCCGCCA AGTTCGAGAT CACCGGCATG
GGCGCCATCA TTCTGGATGC CAATGGCGCA CGCGTGGGCG ACGAGGACGC AGATGTGACC
ATGACCGCCG ACGCCGAAAC CTTTGAAGAA ATCCTGTCGG GCGAGTTGAA CCCGACCGCA
GCTTTCATGG GCGGCAAACT CACCATCGAC GGCGATATGG GCGTTGCAAT GCAGCTGGCG
CAGGCACTGG CCTGA
|
|---|
| Protein sequence | MKHHQGKTTM SDTLEQAAAK LNEKMDGGFD SSAKFEITGM GAIILDANGA RVGDEDADVT
MTADAETFEE ILSGELNPTA AFMGGKLTID GDMGVAMQLA QALA
|
|---|
| |