| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0568 |
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| Symbol | |
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| ID | 4077919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 604197 |
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| End bp | 605432 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638005865 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_612563 |
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| Protein GI | 99080409 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.294597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000308959 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGATTT TAACTTCAAG CGACTCAATT GACGCGATCT TATTTCCAAG CACCTTCATT
TCCGGTGGAT ACATTTTCCC AACGCCTGTC TACAGATATG ATGTGACTGA CAGCTACATT
TCCTACACGC TTGACCAAAC GCGCGGCTCG ACCGGCTATT ACAACATAAA CCCAACTGTT
CGGATATTTG GGGACAATCT CAGTGTCGAC TCGTCTGGGC GTGCGTCAGG CACGATCACC
GCGATGGAGT TTCGCTCTTC TAATCGGGGC GAGATCGCAC GCATTGAGCA GATCAGCATC
AATGCATCCG ATTTCACGGA CATCATTTTC GCACGGATCT CCGGAGACAA TACGTCAAGC
ACACAATTCG AGACCCTGCT GGCAGAGGCT TTGGACGTTC TTGAATTTGG CAATCGCAAC
CAAGACATCT CTGACAGAGG CATGTTGCAG TATTTGAGCT TCATCGACCT GCAGGGAGGA
AACGACGAAT TCCATCTCGC GCGCCCCAAA ACTGACGGGA CACGCACAAT TGACGGCGGC
GCGGGTCAGG ACACGCTCCA TCTTGATGAC TTCGGCGTGC CCGACTCGTT TGTCGTGAAC
TTAAAGACAG GCCAGATCAT CACCGACTCA ACTTCGGTGA ATATCACTGG CTTTGAGATC
ATTGACGGCA ACCCCTTCGT CGATCGCTAT ATTGGTTCCA ACAGCGGTGA TCACATCAGA
GCAGCTGGTC GCGCCGATCA GATCAACGGG TTCGGGGGGC GCGACACCCT CTCTGGAGGA
TGGGGGGATG ACAGGATCAC GGGTGGCCGA GGCAAAGACA GACTTCATGG CGACGAAGGC
AACGACTTTC TGCGCGGGGA CGCGGGCGCA GATCTTCTTG TTGGTGGCGC AGGGCGGGAT
CGCCTCGTCG GCCGCGCCGG GCAGGACACG CTCATCGCAG ATGACGGGCG GGACCGCCTC
ATCGGCGGAG CGGGTTCGGA CCTCTTCGTG TTCAATCTCA GCGGCTCTGG AAGCAAGATC
CGCGACTTTG ACATCTCTGA GGGAGATCAC ATCCGACTCG ACACAGACGG GAGTTACGCC
TTTGACACCG ATAGTCTGAA ACTGACGCGC TCTGGCTTTC GGATAAACAC AATCGACTCA
GACTCGAATG TCGAGACGCT TCGGGTCGTG CTGAATGATG ACGCGAGACA TGACCTCAGC
CTCGACGCGC TGTGGGACGT CCTGACATTT GGCTGA
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| Protein sequence | MAILTSSDSI DAILFPSTFI SGGYIFPTPV YRYDVTDSYI SYTLDQTRGS TGYYNINPTV
RIFGDNLSVD SSGRASGTIT AMEFRSSNRG EIARIEQISI NASDFTDIIF ARISGDNTSS
TQFETLLAEA LDVLEFGNRN QDISDRGMLQ YLSFIDLQGG NDEFHLARPK TDGTRTIDGG
AGQDTLHLDD FGVPDSFVVN LKTGQIITDS TSVNITGFEI IDGNPFVDRY IGSNSGDHIR
AAGRADQING FGGRDTLSGG WGDDRITGGR GKDRLHGDEG NDFLRGDAGA DLLVGGAGRD
RLVGRAGQDT LIADDGRDRL IGGAGSDLFV FNLSGSGSKI RDFDISEGDH IRLDTDGSYA
FDTDSLKLTR SGFRINTIDS DSNVETLRVV LNDDARHDLS LDALWDVLTF G
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