| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0566 |
|---|
| Symbol | |
|---|
| ID | 4077917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 603420 |
|---|
| End bp | 603689 |
|---|
| Gene Length | 270 bp |
|---|
| Protein Length | 89 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005863 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612561 |
|---|
| Protein GI | 99080407 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1734] DnaK suppressor protein |
|---|
| TIGRFAM ID | [TIGR02419] phage/conjugal plasmid C-4 type zinc finger protein, TraR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00118143 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGGG GATGGGCAAA AGACGGCGCG GTAAGCGAAC AGATCGAGGC TTCGATCTCG
GACGAACTGG CACGTATGAA TGCACGCCGT GCGCCAGCGG GTGAAAGCCT GACCCATTGT
GCTGATTGCG AAGAGGAAAT CCCCGAGGCA CGGCGCTTGG CCATCCCCGG TGTGAAACTC
TGTATCGACT GCCAAGAGGA GCGCGACGGT GTGCAGCGTC AGCGCGGCGG CATCAATCGT
CGCGGCAGCA AAGACAGCCA GCTCAAGTGA
|
|---|
| Protein sequence | MAGGWAKDGA VSEQIEASIS DELARMNARR APAGESLTHC ADCEEEIPEA RRLAIPGVKL
CIDCQEERDG VQRQRGGINR RGSKDSQLK
|
|---|
| |