| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0562 |
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| Symbol | |
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| ID | 4077913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 598290 |
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| End bp | 599228 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005859 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_612557 |
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| Protein GI | 99080403 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02424] pca operon transcription factor PcaQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.260746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.122148 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAAACT ATCAGCACGC GCGTCAGGTC AAAATCCGAC ATATGCAGTG CTTGCTTGAG
GTGGTGTCCT GTGGCAGCCT GAAGGGTGCA GCAGAGCGGC TCTATCTCAC GCAGCCCGCC
ATCTCCCGCA CGCTCAAGGA ACTCGAAGAC ATTCTGGGCA GCACCTTGTT GTTGCGCAGT
CGGGCTGGTG TCGAGCTGAC GGAGGCAGGC GAAGTCTTTG CGCATTTTGC GCGAATGAGC
CTTGCCGCGT TGGACCATGG GCTCGAAAGC CTCGAGCGCA CCCGTGGCGG GGCGCTGCAG
CAGACAGTGA CGATCGGGGC CCTTCCCAGC GTTGCGGCGG GGCTGCTGCC CAGGGTGGCC
GAGGGATTTC AGCGCCTTGC GCCGGGTGCT GTTTTGCATC TCTCGGATGG GCCGCATGGG
GCACTGATTG ACCTTCTGCG CGGGGGCGCG GTCAGCATGG TCATCGGGCG GCTTGGAGAT
CCGGCCAGTA TGCAGGGCGT GTCTTTCACG CAGGTTTATA CCGAAGAAGT CGTCTGCGTC
GTGCGCCCCG GCCACCCGTG CCTCGCGGCG CCAGAACTTG ACGATCTGTC GCGTTGGCCT
GTGATTTTCC CGCCAGTGAG CGCAGCAATC CGACCGCAGG TGGAGCGCTG GTTGATCAGT
CATGGCCTTT CGGAGCCGCC CAATCGGATC GAGACTGTAT CAGGCGCGTT TGCGCGGGTG
CATGCCCGCG ACACCGACGC GATCTGGATG ATCTCTCATG GGGTTGTGCG CAATGAACTC
TCGGACGGGC GGTTGATACG CCTGCCTTTT GATACCTCGC TTACCAAAGG TCCGGTAGGA
TTGATGCAGC GTCAGGATGC GGACCCGAGC CCCCTCGAGA GCTTGTTTGT CAAAGCGCTC
CATGAGGCGA TTGAAGTCTT GGGATATGAT GCGAGTTGA
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| Protein sequence | MVNYQHARQV KIRHMQCLLE VVSCGSLKGA AERLYLTQPA ISRTLKELED ILGSTLLLRS
RAGVELTEAG EVFAHFARMS LAALDHGLES LERTRGGALQ QTVTIGALPS VAAGLLPRVA
EGFQRLAPGA VLHLSDGPHG ALIDLLRGGA VSMVIGRLGD PASMQGVSFT QVYTEEVVCV
VRPGHPCLAA PELDDLSRWP VIFPPVSAAI RPQVERWLIS HGLSEPPNRI ETVSGAFARV
HARDTDAIWM ISHGVVRNEL SDGRLIRLPF DTSLTKGPVG LMQRQDADPS PLESLFVKAL
HEAIEVLGYD AS
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