| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0558 |
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| Symbol | |
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| ID | 4077909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 595135 |
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| End bp | 595857 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005855 |
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| Product | protocatechuate 3,4-dioxygenase, beta subunit |
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| Protein accession | YP_612553 |
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| Protein GI | 99080399 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0665673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.206378 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACG GATATGTAAA TCGCGACCGA CGCTGGCATC CCCCCAGCAT CACGCCCGAT
TATAAAACCT CCGTCGCGCG CGGGCCGCGC CATGCGCCCT TGTCCTTTCC CACCACTTTG
GTCGAGGAAA CCGGGCCTGT CTTTGGCCAC GAGATCCTGG GCCCGCGCGA CAACGACCTG
ATCCTCAATT TTGCCAAGGA CGGCGGCATG GCGATCGGCC CGCGTATCAT TGTGCACGGG
CAGCTGCGCG ATGAATTTGG CCGTGGCGTT CCCGGCGCGC TGATCGAGGT CTGGCAGGCC
AATGCAGGCG GTCGCTACCG CCACAAGAAG GAAAGCTATC TTGCGCCGCT CGATCCCAAT
TTTGGTGGCT GCGGGCGCTG CATCACGGAC GCAGAGGGGT TTTACGAGTT CCGCACCATC
ATGCCAGGCC CCTACCCCTG GCCCAATACC ATGAACGACT GGCGCCCCGC GCATATCCAT
TTCTCGATCT TTGGCGCGAG CTTTGCCCAG CGCCTCATCA CCCAGATGTA TTTCGAGGGA
GATCCGCTCA TTTGGCGCTG CCCAATCGTG GATACGATCC CCACGCGCGA AGCGATTGAA
AGCCTCGTGG CGCCCCTTGA TATGGCGCGC ACCGTGCCGA TGGACGCGCG TGCCTATAAA
TTCGACATCA CCCTGCGCGG CCGCCGCCAG ACCCTGTTTG AAAATCGCAT GGAGGGGCTT
TGA
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| Protein sequence | MSNGYVNRDR RWHPPSITPD YKTSVARGPR HAPLSFPTTL VEETGPVFGH EILGPRDNDL
ILNFAKDGGM AIGPRIIVHG QLRDEFGRGV PGALIEVWQA NAGGRYRHKK ESYLAPLDPN
FGGCGRCITD AEGFYEFRTI MPGPYPWPNT MNDWRPAHIH FSIFGASFAQ RLITQMYFEG
DPLIWRCPIV DTIPTREAIE SLVAPLDMAR TVPMDARAYK FDITLRGRRQ TLFENRMEGL
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