| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0557 |
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| Symbol | |
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| ID | 4077908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 594515 |
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| End bp | 595132 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005854 |
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| Product | protocatechuate 3,4-dioxygenase, alpha subunit |
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| Protein accession | YP_612552 |
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| Protein GI | 99080398 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.14207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.305711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTACAAC CTCTGACGCA CCTCAAGGAA TCCCCGTCTC AGACGGCTGG CCCCTATGTA
CATATTGGCT GTACACCGAA TTTTGCTGAC ATCGCCGGGG TCTATCCCGA GGACCTCGGT
CAAAAGATGA TCCTCGGCGA TGTCAAAGGT CAGCGCATCC GCATCACCGG CCATGTCATC
GATGGCACCG GCACGCCCCT GCGCGACGCG CTTGTCGAGA TCTGGCAGCC GGATGCGGCC
GGTCTGTTCA ATGCCCCAAG CGAGACACGC GGCGCGGCAG ATCCGAATTT CACCGGCTTT
GGGCGCTGCC CGTCTGACAT GACCACCGGC GCCTTCGCCT TTGACACAGT AAAGCCCGGC
GCGGTGCCCT TTGTGGACGG GCGCATGCAG GCCCCGCATG TGACCTTCTG GATCGTCGCG
CGCGGCATCA ACCTCGGCCT GCACACGCGG ATGTATTTCC CCGACGAAGC AGACGCAAAC
GTCGCCGACC CGATCCTCAC GCGCATCGAA CATCAGACCC GTGTCAAAAC CCTCATTGCC
GAGGCACAGG GCGACGGGCA GTATCACTTT GACATCCGCC TCCAGGGGCA CAATGAAACC
GTCTTTTTCG ACATCTGA
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| Protein sequence | MVQPLTHLKE SPSQTAGPYV HIGCTPNFAD IAGVYPEDLG QKMILGDVKG QRIRITGHVI
DGTGTPLRDA LVEIWQPDAA GLFNAPSETR GAADPNFTGF GRCPSDMTTG AFAFDTVKPG
AVPFVDGRMQ APHVTFWIVA RGINLGLHTR MYFPDEADAN VADPILTRIE HQTRVKTLIA
EAQGDGQYHF DIRLQGHNET VFFDI
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