| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0556 |
|---|
| Symbol | |
|---|
| ID | 4077907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 593672 |
|---|
| End bp | 594505 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005853 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612551 |
|---|
| Protein GI | 99080397 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3246] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.103036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.316329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCC CCTGCATCCT CTGCGTCGCC ATCACCGGGT CCTTGCCGAC CAAGGACAAC
AATCCGGCGG TGCCGATCAC CATCTCCGAG CAGATCGAGA GCACCCATGA AGCCTTTGAG
GCCGGCGCAA CGATCTGCCA CGCGCATGTC AGGAATGACG ATCAAACGCC CTCTTCGGAC
CCGGAGAAAT TCGAACGTCT CAAGGAAGGG CTGGAAAAAC ACTGCCCCGG CATGATCATC
CAGTTCTCCA CGGGGGGGCG GTCGGGTGCA GGCAAGGCGC GTGGGGGCAT GTTGCCGCTT
GCGCCCGACA TGGCTTCGCT CTCGGTTGGG TCGAACAATT TCCCGACCCG CGTCTATGAG
AATCCACCTG ACCTCGTGGA CTGGCTGGCG GGCGAGATGC GCACGCATCA GGTGACACCC
GAAGTGGAAG CCTTTGACCT CAGCCATATC CTGAATGCGA TTGCGCTACA CAAGAGCGGT
GCGCTTTACG GCAAACTCTA TGTGCAGTTT GTTATGGGCG TGAAAAACGC CATGCCCGCC
GACAAGGAGG TCTTCGACTT CTATGTTGAT CTGGTCAAAC GCCGCGCGCC CGATGCAAAC
TGGTGTGCCG CAGGGATTGG CGCAAACCAA TTGGTCGTCA ACGAATGGGC CATCGCCGCC
GGGGGCCATA CGCGCGCCGG GCTTGAAGAC AACGTGCGCC TCGACCGCAA TACGCTGGCC
CCTTCTAACG CGGCACTGAT CCGGCGCGCT GCCGAACTCT GCGAAAAATA TGAGCGCCCC
GTCGCCACCT GGCAACAGGC CAGAGAGATC CTTGACGTGC CATTGCGGGC CTGA
|
|---|
| Protein sequence | MSTPCILCVA ITGSLPTKDN NPAVPITISE QIESTHEAFE AGATICHAHV RNDDQTPSSD
PEKFERLKEG LEKHCPGMII QFSTGGRSGA GKARGGMLPL APDMASLSVG SNNFPTRVYE
NPPDLVDWLA GEMRTHQVTP EVEAFDLSHI LNAIALHKSG ALYGKLYVQF VMGVKNAMPA
DKEVFDFYVD LVKRRAPDAN WCAAGIGANQ LVVNEWAIAA GGHTRAGLED NVRLDRNTLA
PSNAALIRRA AELCEKYERP VATWQQAREI LDVPLRA
|
|---|
| |