| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0529 |
|---|
| Symbol | |
|---|
| ID | 4077235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 555733 |
|---|
| End bp | 558348 |
|---|
| Gene Length | 2616 bp |
|---|
| Protein Length | 871 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638005825 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_612524 |
|---|
| Protein GI | 99080370 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.299767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.097306 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGGATC AGGACTCGCA TACGCCCGCA CCCCCCGCCT CCAAGCCCGC AAAACGTGGG
CTGAAGCTGT CTTCGATCAC GCCCAACCTG ACCCGCAAAC GACGCGGAGA CGCTGCGAAC
CAGACCGAGG GGCCGGTCAA GATCTCCATG GTCGCGCCGA CAGCGAACCC AAAGCCCGCA
AACGCCGAAG CCAAGTTGGA TGCGCGGCTC TCTGTCCCTA AGTTTCTGCA ACGCAAAGCA
AAGCCCGCAG CAGCCGAGAC ACCCGCCGCC CCCCAAACGC AAGCCCCCCC TGCCGTAGAT
CCAATTGAGA TCGAATCCTT CGTGGCGCCC CGCCCTGCCG CAACAAAGCC GGACGCCGCG
CCGGCAACAG AGCCACTGGC CACTTTCGAA CCCGAAGAGG ATCCACAGAA CGCCGAAGCA
GCGGATCAAG ACCAGATGCG CCCGGAGCCC GCGCCGCAAA CGGCTCGCGA GACCGAAGCT
GCCTCTGCGT CCATGGTCGC GGCGGAAGAC ACGTTGGGAC GCCTCAAAGC ACGGGCACAG
CTGCTCTGTC GCCTTGCAGC TTTGCGGGGC TGCACGCTTC ACGCACAGGA TATGCTCGAG
CATCTTCAGG CCAGCGGTCC CGCAGCCCTG CGCCCCGAAG CCATGATGAG CGCGCTGATC
ACCGCTGGCC TCAAGGCCCG CGTGCAAAGC GTGAAACGCC CCACACCCCG GCACTGGCCG
GGCATCGCCA TCATGCAGGG CGGACAGCCC GTTCTGGTGC TCTCTCAGGG CAAGGCTGGC
GTTACCATTT ACGACAGCTC CTGCCCCGAT GGGCGCGCCG AAGTGCCAAT GCAGGAGTTC
ATGCCCTATT ATGCGGGCCA GATCCTCACG ACACGCGCGA CCCTGTCGCA ACTGACGCAG
CGCCATACGC CTCAGCTGGA TACCTCGCAT TGGTTCTGGG GAGAATTCCC CAAGTATCGC
AGACAGATGG GCGAGATCAT GCTGGGCTCT CTGGTTGCCA ATGTACTCGC GGTTGCGGTG
GCATTGTTCT CCCTCCAGGT CTATGACCGC GTGGTGCCCC ATCAGTCGCA GGCGACCCTC
TGGGTGCTCG CCGTCGGGGC TCTCATGGCG ATCGGGATGG AAGGCATCCT GAAGCTGGCA
CGTGCCCGGA TCACCGATGC GGCAGGCCGC CAAATCGATA TGGCCGTGCA GCACAAGCTG
ATGCGTCGGG TGATCGGCCT CAAGATGGAT CAGAGCCCCC TGCCCCCGTC GGGTCTCTTT
GCAGCGCTGC GAGATTTTGC CTCGGTGCGC GAGTTCTTTA CTTCCTCAAC CCTGTCGACC
CTGGCCGACG TGCCCTTCAT CGCGGTGTTC CTCTTGCTGG TCGCCTCGAT TGGTGGGCCG
GTCGTCTATG TCATCCTGAT CGGCGCCGTC CTGATGCTGT TGCCCGCCTA CTTCATCCAG
AAAAAGATGC TGGCGATGAC ACGACTGGCG CAAGGTGCCT CCACCAAGAG CGGGCGGCTG
CTGAATGAGG TGGTCAATGA GATGGAGACC ATCAAGACCC AACGTGGCGA GGAACGTGTT
CTGCGGCTCT GGGATGAGCT GAACCTCCTG TCCTCTCAGG CCTCCAACGG CCAGCGCAAA
CTCGCAAGTG CGCTCACCTA CTGGTCGCAG GGGGTGCAGC AGGCAACCTA TATTTGTGCT
GTAATTCTGG GGACTTATAT GGTGTTCGCC GGTGAGTTCA CGGTCGGCAC CATCATCGCA
ACAGGTATCC TGACAAGCCG CACACTCGCT CCGCTCACGC AGTTTGCAGG CACGCTGGCG
CGCTGGAGCA ATGTGCGTGC GGCGCTGGAT GCGCTTGATA TGATCGCAGA CGCCCCGCAG
GAGCGCGAAA AGGGCCGCGC CTACCTGCGC CGCGAGAGCA TCGAAGGCCG TTTTGAGCTG
CGCGAAGTCG TATTTCGCTA TGACCCTGAT GCAGCGCCGA CAGTAGATGT TCCAGCGGTT
GCGGTGCTCC CCGGTCAGCG CGTTGCCATT CTTGGCGTCA ACGGGTCCGG GAAATCGACG
CTCCTGAAGC TGCTCGCCGG GCTTTACACC CCCGAACGTG GGCGCGTGAT GCTGGACGGC
ACCGATATGA GCCAGATCGA GCCGCGCGAC CTGCGGCGCC ACATCGGCTA TCTCGGCCAG
GAGGTGCGCC TCTTTGCAGG CACGCTGCGC GACAACCTGA ACCTCTCCTA TCTGCCTCAT
GAAGACGAGC GAATCATGGA GGCGCTTGAG TTTGCAGGGC TTGCGGCATT CGTGCGGGGA
CACCCGCGCG GGCTCGACCT TGAAATCGGT GACGGAGGCG CGGGCCTGTC AATCGGTCAG
CGTCAAGCTG TGGGATGGGC GCGCCTGCAC TTGCAGAACC CGTCGGTCGT GCTTTTGGAC
GAACCCACCG CGGCGCTCGA TCAGACGCTT GAACGCACGC TGGTGAGCCG TCTGGACAGC
TGGCTCGGGA CGCGCACTGC CATTGTTGCA ACGCACCGTA TGCCGATCCT GTCGCTCACC
AACCGCACCT TGATCCTGCA GGCCGGGCGC ATGGTTGTGG ACGGGCCACG CGACGAGGTG
TTGGCGCATC TGAACGGGGG GAGCAAAGCC TCATGA
|
|---|
| Protein sequence | MTDQDSHTPA PPASKPAKRG LKLSSITPNL TRKRRGDAAN QTEGPVKISM VAPTANPKPA
NAEAKLDARL SVPKFLQRKA KPAAAETPAA PQTQAPPAVD PIEIESFVAP RPAATKPDAA
PATEPLATFE PEEDPQNAEA ADQDQMRPEP APQTARETEA ASASMVAAED TLGRLKARAQ
LLCRLAALRG CTLHAQDMLE HLQASGPAAL RPEAMMSALI TAGLKARVQS VKRPTPRHWP
GIAIMQGGQP VLVLSQGKAG VTIYDSSCPD GRAEVPMQEF MPYYAGQILT TRATLSQLTQ
RHTPQLDTSH WFWGEFPKYR RQMGEIMLGS LVANVLAVAV ALFSLQVYDR VVPHQSQATL
WVLAVGALMA IGMEGILKLA RARITDAAGR QIDMAVQHKL MRRVIGLKMD QSPLPPSGLF
AALRDFASVR EFFTSSTLST LADVPFIAVF LLLVASIGGP VVYVILIGAV LMLLPAYFIQ
KKMLAMTRLA QGASTKSGRL LNEVVNEMET IKTQRGEERV LRLWDELNLL SSQASNGQRK
LASALTYWSQ GVQQATYICA VILGTYMVFA GEFTVGTIIA TGILTSRTLA PLTQFAGTLA
RWSNVRAALD ALDMIADAPQ EREKGRAYLR RESIEGRFEL REVVFRYDPD AAPTVDVPAV
AVLPGQRVAI LGVNGSGKST LLKLLAGLYT PERGRVMLDG TDMSQIEPRD LRRHIGYLGQ
EVRLFAGTLR DNLNLSYLPH EDERIMEALE FAGLAAFVRG HPRGLDLEIG DGGAGLSIGQ
RQAVGWARLH LQNPSVVLLD EPTAALDQTL ERTLVSRLDS WLGTRTAIVA THRMPILSLT
NRTLILQAGR MVVDGPRDEV LAHLNGGSKA S
|
|---|
| |