| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0528 |
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| Symbol | |
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| ID | 4077234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 554564 |
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| End bp | 555736 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005824 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_612523 |
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| Protein GI | 99080369 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.178429 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCG CAGCAGACAT GGACATCCTT GAAGGCACCC ATGGCGCCAG CCGCATGATC
AAGCTGGTGG CGCTGGTGCT CGTTATGTTT GTCACCTGGG CCGGTTTCGC CTCGGTGGAC
GAGATCGTGC GCGCCGACGG ACAGGTTGTC TCCTCCTCGC GGGCGCAAAT CGTACAGAAC
CTCGAAGGCG GCATCCTTGC GGAACTCTAT GTGCGTCAGG GCGATACCGT GCAGGCCGGG
CAGATCCTCG CCAAGCTGCA GGATACCAAA TTTCGGGCAG CCTCAGACGA CCTTCAAGAC
CAGATTGATG CGCTTGAGAT CAAGCAATAC CGCCTCGAGG CGGAGATCGA GGGAGCCTAT
GAGTTTGCCG TCCCTGACGC ACTGGCAAGC CGTTCACCGG ACATCCTTGC CTCGGAACGC
GCGCTGCTCA AGGCGCGTCA GAGCGACTTT GACAGCCGCC GCAACAGCGC CGAGGACATC
CTGCGGCAGC TGAAGAACGA GCTTTCCAAC CTGCAGTCCC TGCACGAACA GAAGATTGTC
GCACTGCTTG AGGTGAACGA GGCCAAGAAA AAGGTGAGCG ACGCGCAGGC CAAATTCGAC
GAGATCGGTA CCCAGGCCGA ATTGACGCTC GCCGAAGAAT ATTCCGACAC CCTGCGCGAG
CTGACTTCGC TGCGTCAGGA ACAGCGGCTT GCGCGTGACC AGCTTGACCG GACGGTCATC
ACCTCGCCCA TGGCGGGGAT CGTCAACAGC CTCGCCGTGA CCACAATCGG TGGCGTGGTG
CGCCCCGGTG ATGAGATCCT CGAGATCATT CCTTTGGGCG AAGAGCTCTT TGTCGAAGCC
CGTGTCAAAC CCGAAGACAT CGCCAATGTG CAGCGCGGGC AGGATGTGAC CATCAAGCTC
ACCGCCTATG ACTACACGAT TTATGGTTCG CTCCGGGGCA AGGTGGACAT CGTGTCCGCC
GATACCTTTG AGGATGAGCG CGACCCCCGC GCGGCCCCGT TTTACCGGGT CACCGTGCGC
GTAGACCGCT CCAGCCTGAC CGCGCGCCAG AAACAAATCG AAATCCGCCC AGGCATGCGC
GCCACGGCAG AGCTGCAAAC CGGATCAAAG ACGATCCTCA GTTACCTGTT GAAACCGCTC
TATAAATCAC GCGAAGCCTT CCGGGAGCCA TAG
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| Protein sequence | MSIAADMDIL EGTHGASRMI KLVALVLVMF VTWAGFASVD EIVRADGQVV SSSRAQIVQN
LEGGILAELY VRQGDTVQAG QILAKLQDTK FRAASDDLQD QIDALEIKQY RLEAEIEGAY
EFAVPDALAS RSPDILASER ALLKARQSDF DSRRNSAEDI LRQLKNELSN LQSLHEQKIV
ALLEVNEAKK KVSDAQAKFD EIGTQAELTL AEEYSDTLRE LTSLRQEQRL ARDQLDRTVI
TSPMAGIVNS LAVTTIGGVV RPGDEILEII PLGEELFVEA RVKPEDIANV QRGQDVTIKL
TAYDYTIYGS LRGKVDIVSA DTFEDERDPR AAPFYRVTVR VDRSSLTARQ KQIEIRPGMR
ATAELQTGSK TILSYLLKPL YKSREAFREP
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