| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0500 |
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| Symbol | dnaE |
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| ID | 4078246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 525502 |
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| End bp | 529002 |
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| Gene Length | 3501 bp |
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| Protein Length | 1166 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005796 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_612495 |
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| Protein GI | 99080341 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0751072 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.378075 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCTC ATCCCCGATT CATTCACCTG CGTACCCATA CCGAATACTC TCTGCTGGAG
GGGGCGGTTC GGCTTAAGAA ACTGCCGGAT CTGTGCAAGG CCAACCAGAT GCCTGCAATT
GCGATCACCG ACACCAACTC GATGTTCGCG GCGCTTGAGT TTTCCGTCAC GCTTTCGGGG
GCAGGCATCC AGCCGATCAT TGGCTGCCAG GTTGATCTTA CGTTTGAAAA GTCTGATCCC
GGCGAGAAGC CGAAGTTTCC TGCACCGGTG GTGCTTTTGG CGCAGGATGA GACCGGGTAT
GAGCATCTCA TGCGCCTGTC GTCCTGCCTC TATGTTGATA ATGGCGGGCA GCTGCCGCAG
GTCTCGCTTG AGGAGCTTGA GGCGAACGCA GGCGGGTTGA TTTGCCTGAC GGGGGGGCCG
GAAGGCCCGA TTGGCAAGCT CTTACAGCAA GGGCAGCGCC CGGCGGCCGA GACACTGATG
CAGCGCCTCA AAGGAATGTT TCCGGATCGT CTTTATGTGG AGTTGCAGCG CCATCCGGGC
GAGGACGGCC AGCCCGAAGC GGAAACCCTG ACCGAGCGGG GCCATGTGGA GATGGCCTAT
GCGATGGATC TGCCGCTGGT GGCCACCAAT GACGTCTATT TCCCCAAAAC AGAGATGTAT
GAAGCGCATG ATGCGCTGAT CTGCATTGCC GAGGGGGCCT ATGTTGATCA GGCGGAGCCG
CGACGTCGTC TGACCGCTCA GCATTATTTC AAGAGCCAGG AGGAGATGAT CGCGCTGTTT
GCGGATCTTC CGGAGGCGAT TGAAAACACC GTGGAAATTG CGCAGCGCTG TGCATTCATG
GCCTATCGCC GCGACCCCAT CCTGCCCAAA TTCGCAGATG ACGAGGTGGA CGAGCTGCGC
CGACAGGCCA ACGAGGGCCT GCAGCAGCGC CTCGCGGTGA TCCCGCATGC GGTTCCGGTC
GAGAAATATC AGGAGCGGCT CGATTTTGAA CTCGGCATCA TCGAGAGCAT GGGCTTTCCC
GGCTACTTTC TGATCGTTGC CGACTTTATC AAATGGGGTA AGGAACAGGG GATCCCGGTG
GGGCCCGGGC GGGGCTCGGG CGCTGGGTCG CTGGTGGCCT ATGCGCTGAC GATTACCGAC
CTTGACCCGC TGCGCTACAG CTTGCTGTTC GAGCGCTTCC TGAACCCCGA ACGGGTCTCG
ATGCCCGACT TCGACATCGA CTTTTGCATG GATCGCCGCG AGGAGGTGAT CAAATACGTG
CAGCAGAAAT ACGGCCGCGA CAAAGTGGGG CAGATCATCA CCTTTGGTGC GCTTCTGTCC
AAAGCGGCGG TGCGCGACAT TGGTCGTGTG CTGCAGATGC CCTTTGGACA GGTGGATCGA
CTGTCGAAGA TGATCCCGGT CGAAGGCGTG AAGCCCGTCT CGATTGAGAA AGCCCTGCAA
GATGAACCGC GCCTCGCTGA AGAGGCGCGC AACGAACCGG TGGTGGACCG GCTGCTTACG
TATGGTCAGC AGGTCGAGGG ACTGCTGCGC AATGCCTCCA CCCACGCGGC GGGGGTTGTT
ATCGGGGACC GGCCTCTGGA TGCGCTGGTG CCGCTCTATC AGGATCCGCG TTCGGACATG
CCTGCAACCC AGTTCAACAT GAAGTGGGTG GAGCAGGCCG GATTGGTGAA ATTCGACTTT
CTCGGTCTCA AGACGCTCAC CGTGATTGAA AACGCGATGA AGCTGATTTT CAAATCCGGG
CGCGACCTGC ATATCGGGGC TGACGGCACC GAGCTATATG AACCCGCAGA AGGGGCGGAG
AACCAGATCA ACCTGATCCC GCTCGATGAT GAGGTTACCT ACAACCTCTA TTCACGCGCC
AAGACGGTCG CGGTGTTCCA GGTGGAATCC ACCGGCATGA TGGATGCGCT GAAGCGCATG
AAACCCACCT GCATCGAGGA CATCGTGGCG CTTGTGGCGC TCTATCGTCC GGGGCCGATG
GAGAATATTC CGGTCTATTG CGAGGTGAAA AACGGCCAGC GCGAGATTAC CTCGGTGCAT
CCGCTGATTG ACCATATCCT CGAGGAAACC CAAGGCATCA TCGTGTATCA GGAACAGGTG
ATGCAGATTG CCCAGGTGAT GGCGGGCTAT AGCCTCGGCG GTGCGGATCT CTTGCGCCGT
GCGATGGGTA AGAAAATCAA GGAGGCGATG GACGCCGAAC GCCCGAAATT TGAAAAGGGC
GCGGCCGAAA ACGGCGTCGA CAAGAAAAAA GCCTCTGAGG TTTTTGACCT TCTGGAGAAA
TTCGCCAACT ACGGCTTCAA CAAGTCCCAC GCCGCAGCCT ATGCGGTGGT GTCCTATCAG
ACCGCTTGGC TCAAGGCGAA CCACCCGGTC GAGTTCATGG CCGGTGTCAT GAACTGCGAT
ATTCACCTTA CTGAAAAGCT CGCGGTATAC TTCGAGGAAG TGAAAAAGGG GCTGCAGCTT
CCCTATGTGG CGCCAGATAT TAACCGTTCG CTTGCCACCT TTGACGTGGT CGACGGGGAA
CTGGTCTACG CGCTGGGCGC GCTCAAGAAC GTGGGCGTTG AGGCGATGAA CATGATCGTC
ACGGCGCGTG GCGACAAACC CTTTGTGAAC CTCTATGATT TTGCGCGCCG GGTGGATCTG
AAACGGGTTG GTAAACGCCC GCTCGAGATG CTTGCGCGCG CCGGGGCTTT TGACGTTCTA
GATCCCAACC GCCGCCGCGT CTTTGAAAGC CTCGAAGGGT TGGTGCAATA CTCCGCCGCC
ATTCAGGAAC AGAAGAACTC CAATCAGGTG TCGCTCTTTG GCGAGGCGGG AGATGATCTG
CCGGAACCGC GCATGGCCGG GGTGCCCGAC TGGCTGCCGG CGGAACGGCT GAGCGAAGAG
TTCAAGGCGA TTGGCTTTTA TCTCACGGGG CATCCACTGG ATGACTACAT GCCTGCCCTC
AAACGCAAGG ATGTGATGAC ACTCGATGAG GTCATGGCCA AGGCCGAGCG CGGCCCGTTT
ATGGCCAAGA TGGCAGGGGT CGTGGCCGGA CGTCAGGAAC GTAAATCCGC GCGTGGCAAC
CGTTTTGCCT TCGCGCAGCT TTCAGACACC ACCGGTGCTT ACGAGGTGAC GATCTTCTCG
GATGTGCTCG AGAAAAGCCG CGACCATCTG GAGACGGGCT CCAAGGTGGT GATCACCGCC
GAAGCCACGA TGGAAAGCGA TCAGCTGAAG CTGTTGATGC GTTCGGCGGG GCCGGTGGAT
TCTGCGATTG CGGATGCGGG GCGCTCCAGT TTGCGCGTCT ATCTCGAGAG CGCCTCTGCG
GTGGCAACCG TGGCGACCGT GTTGGAGGAC GCCAAGAAGG CCGCCAAAAA CGCCAGCCCC
GGTGAGATCT ATGTCTACCT GCAAGATCCG GCGCTGCCCG GTGATGTGGA AATGGACCTT
GGCCAATTGT TCCCCATCAA CCCGCAGATC AAAGGCGCGC TCAAGAGCCT CGAGGGGGTG
ATGGACGTGG AGGAAATTTA A
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| Protein sequence | MTAHPRFIHL RTHTEYSLLE GAVRLKKLPD LCKANQMPAI AITDTNSMFA ALEFSVTLSG
AGIQPIIGCQ VDLTFEKSDP GEKPKFPAPV VLLAQDETGY EHLMRLSSCL YVDNGGQLPQ
VSLEELEANA GGLICLTGGP EGPIGKLLQQ GQRPAAETLM QRLKGMFPDR LYVELQRHPG
EDGQPEAETL TERGHVEMAY AMDLPLVATN DVYFPKTEMY EAHDALICIA EGAYVDQAEP
RRRLTAQHYF KSQEEMIALF ADLPEAIENT VEIAQRCAFM AYRRDPILPK FADDEVDELR
RQANEGLQQR LAVIPHAVPV EKYQERLDFE LGIIESMGFP GYFLIVADFI KWGKEQGIPV
GPGRGSGAGS LVAYALTITD LDPLRYSLLF ERFLNPERVS MPDFDIDFCM DRREEVIKYV
QQKYGRDKVG QIITFGALLS KAAVRDIGRV LQMPFGQVDR LSKMIPVEGV KPVSIEKALQ
DEPRLAEEAR NEPVVDRLLT YGQQVEGLLR NASTHAAGVV IGDRPLDALV PLYQDPRSDM
PATQFNMKWV EQAGLVKFDF LGLKTLTVIE NAMKLIFKSG RDLHIGADGT ELYEPAEGAE
NQINLIPLDD EVTYNLYSRA KTVAVFQVES TGMMDALKRM KPTCIEDIVA LVALYRPGPM
ENIPVYCEVK NGQREITSVH PLIDHILEET QGIIVYQEQV MQIAQVMAGY SLGGADLLRR
AMGKKIKEAM DAERPKFEKG AAENGVDKKK ASEVFDLLEK FANYGFNKSH AAAYAVVSYQ
TAWLKANHPV EFMAGVMNCD IHLTEKLAVY FEEVKKGLQL PYVAPDINRS LATFDVVDGE
LVYALGALKN VGVEAMNMIV TARGDKPFVN LYDFARRVDL KRVGKRPLEM LARAGAFDVL
DPNRRRVFES LEGLVQYSAA IQEQKNSNQV SLFGEAGDDL PEPRMAGVPD WLPAERLSEE
FKAIGFYLTG HPLDDYMPAL KRKDVMTLDE VMAKAERGPF MAKMAGVVAG RQERKSARGN
RFAFAQLSDT TGAYEVTIFS DVLEKSRDHL ETGSKVVITA EATMESDQLK LLMRSAGPVD
SAIADAGRSS LRVYLESASA VATVATVLED AKKAAKNASP GEIYVYLQDP ALPGDVEMDL
GQLFPINPQI KGALKSLEGV MDVEEI
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