Gene TM1040_0479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0479 
Symbol 
ID4078517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp501173 
End bp501775 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content65% 
IMG OID638005775 
Producthypothetical protein 
Protein accessionYP_612474 
Protein GI99080320 
COG category[S] Function unknown 
COG ID[COG3807] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.539349 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCATCG AGGCCGTGCA GACATTCACT GAACAAAATG AACGCCCGCG CAGCCGCTCT 
GTGCGAGTCG CCCTGCGCGG GGCGCTTTGT GCACTTGTGA TGGGTGGTTT CTTTGTCAGC
ACGGCCCCCG TCGCCACCGC GCAGGAGAGC GCGCCCGAGA GAGCTGCCGC GCAAACTCTT
GGGCCGGTCA CGAACCTGCC CCTGCCCCGC TACGTGTCCA TGAAAGCCGC CGAAGGCAAC
GTGCGCCGTG GCCCGTCACT CAATCATCGT ATCGACTGGG TGTTCAAACG CCGCGGGATG
CCATTGGAGG TCACGGCCGA ATATGGCCAC TGGCGACGCG TGCGTGACCG GGATGGACAA
GGAGGCTGGG TTCATTACGC GCTTTTGTCG GGGGTGCGCA CGGTCTTGGT CGAACAGGAT
CTTGTGCAAG TGCGCGCACG CCCTCAGGAG GACGCGCCGG CGGTGGCCGC GTTTGAGCTT
GGGGTTGTGG CCCAGCTTGG CGCCTGCACG CGCGACTGGT GCGAAATCAC CGCCGGGGGA
CACAGCGGCT GGACGCACAA AGACAATCTC TGGGGCGTTG ATCCGGACGA ACTGCGCGAG
TAA
 
Protein sequence
MGIEAVQTFT EQNERPRSRS VRVALRGALC ALVMGGFFVS TAPVATAQES APERAAAQTL 
GPVTNLPLPR YVSMKAAEGN VRRGPSLNHR IDWVFKRRGM PLEVTAEYGH WRRVRDRDGQ
GGWVHYALLS GVRTVLVEQD LVQVRARPQE DAPAVAAFEL GVVAQLGACT RDWCEITAGG
HSGWTHKDNL WGVDPDELRE