| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0477 |
|---|
| Symbol | |
|---|
| ID | 4078515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 497149 |
|---|
| End bp | 499365 |
|---|
| Gene Length | 2217 bp |
|---|
| Protein Length | 738 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005773 |
|---|
| Product | isocitrate dehydrogenase, NADP-dependent |
|---|
| Protein accession | YP_612472 |
|---|
| Protein GI | 99080318 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAA ATTCAACGCC GGACATTTTG TATACCATTG TAGACGAAGC GCCCGAGCTG
GCCTCGGCAT CTTTCCTGCC GATCATCCGC AAATTTGCGG ATGCTGCCGG TGTCAGCGTT
GGCACAAAGG ACATTTCGCT GGCCGCACGC ATTATCGCGA CCTTCCCGGA GAACCTCACC
GAAGAGCAGC GCCAAAGCGA TGACCTCGCC GCGCTGGGCG AGCTGGTGAA GACCCCCGAC
GCAAATGTCA TCAAACTGCC CAACATCTCT GCATCCGTGC CCCAGCTGGT GGCCGCGATC
GAGGAACTGC AGGCGCAGGG GTACAAGCTG CCCGACTACC CCTACGAGCC CGCAACCGAC
GCGGAAAAGG AAATCCGCGC CCGCTACGAC ACCATCAAGG GCTCCGCGGT GAACCCAGTC
CTGCGCGAAG GCAACTCGGA CCGTCGTTCG GCCAAAGCCG TGAAGAACTA CGCTCAGAAC
AACCCGCATT CGATGGGCGC ATGGTCTGGC GACAGCAAGA CCAAAGTCTC GTCGATGCCC
GGCAACGACT TTTATGCCAA CGAGAAATCC GCCACCATTT CCGCCGAGCA GGCCGGTGAC
GCGAAGATCG AATTTGTCGC AAAAGACGGG TCCGTCACCG TTCTGAAAGA CGGCTGGCCG
CTGGCAGAAG GCACGGTTGC CGATGCGACC TTCATGTCCG CCAAAGCGCT CGCCGCGTTC
CTGTCTGGCG CGATCGAGGA TACCAAGGCG GACGGCACCA TGTTCTCGCT GCACATGAAG
GCCACCATGA TGAAGGTCTC CGACCCGATC ATCTTTGGCC ACGCGGTCAA AGCCTGGCTC
GGCCCTGTGT GGGATAAACA CGGCGCCGCA ATTGCTGCCG CAGGTGGGTC GCCGAACTCC
GGTCTGGGTG CGGTTCTGGC CGCCATCGAC AGCCTGCCCA ACGCAGATGA GATCAAATCC
GAGATCGCCG CGCTCGAACG CCCCTCCATG TATATGGTGG ACAGCGACAA GGGTATCACC
AACCTGCATG TGCCCTCCGA CGTGATCATC GATGCCTCCA TGCCGGCCGT GATCCGTGCT
GGCGGTAAGG GCTGGGACGA GACCGGCGCC AAGGGCGACA CCAACTGCGT GATCCCCGAC
CGCTGCTACT CCACCGTCTA TGACGAGACC ATCAACTTCT TCAAAGCCAA TGGCGCGCTC
GACGTGACCA CTGCCGGTTC GGTCGCAAAC GTCGGCTTGA TGGCGCAAAA GGCGGAAGAG
TATGGCTCGC ACCCGACGAC CTTCGAAGCC CCGGCAGACG GCGAGATCCG CGTTATTCTG
GCCAATGGCG AGACCCTGCA CAGCCACGAA GTCGAGGCCG GCGACATCTG GCGCGCCTGC
ACCGTGAAAA AGGCTCCAAT CGAGAACTGG ATTCAACTGG CTTTGGACCG TCAGCGCCTG
ACCGGGTCCG AGGCGATCTT CTGGCTGGAC GCAAACCGCG CCCATGACGC AGAGCTGATC
AAATACGTCA AACCCGCGCT TGATGCGGCT GGCGTCGCCG ACAAGTTCCT GATCATGGCG
CCGCGCGAAG CCACCCGTCA GAGCCTCGAG ACCATCACTG CGGGCAAGGA CAGCATCGCC
ATCACCGGCA ACGTGCTGCG CGACTACCTG ACCGACCTGT TCCCGATCCT CGAGCTTGGC
ACCTCGGCCA AGATGCTGTC GATTGTGAAG CTGATGAACG GCGGCGGCTT GTTTGAGACC
GGCGCAGGCG GTTCCGCGCC CAAACACGTG CAGCAACTGG TTGAGGAAAA CCACCTGCGT
TGGGACTCCA TGGGTGAGTT CTGCGCTCTG GGCGAAAGCC TGAAGTTCCT CGCCGATGTC
AAAGGCAACG AGAAGGCAGG CGTGCTTGGC GCAGCTGCCG AGGTTGCGAC CCAAGGCATC
CTCGACAACA ACAAATCGCC CGAGCGCAAA GTCGGCCAGC CCGACAACCG CGACAGCCAC
TACTGGTTTG CCCGCTACTG GGCAGAAGCC CTCGCGGCAC AGGGTGATGA CGCGGAGCTG
GCCGCGCATT TCAAACCGAT TGCCGAGGCT CTTGCCTCCA ACGAAGCGGC GATTCTGTCT
GAACTCGCCG CCGCTCAGGG AGGCGCAGCC GACATCGGTG GCTATTACCA CCCCTCCGTT
GAAAAGAAGG CCGCCGTCAT GCGCCCCTCT GCAACCCTCA ACGGCATCAT CGGCTGA
|
|---|
| Protein sequence | MAENSTPDIL YTIVDEAPEL ASASFLPIIR KFADAAGVSV GTKDISLAAR IIATFPENLT
EEQRQSDDLA ALGELVKTPD ANVIKLPNIS ASVPQLVAAI EELQAQGYKL PDYPYEPATD
AEKEIRARYD TIKGSAVNPV LREGNSDRRS AKAVKNYAQN NPHSMGAWSG DSKTKVSSMP
GNDFYANEKS ATISAEQAGD AKIEFVAKDG SVTVLKDGWP LAEGTVADAT FMSAKALAAF
LSGAIEDTKA DGTMFSLHMK ATMMKVSDPI IFGHAVKAWL GPVWDKHGAA IAAAGGSPNS
GLGAVLAAID SLPNADEIKS EIAALERPSM YMVDSDKGIT NLHVPSDVII DASMPAVIRA
GGKGWDETGA KGDTNCVIPD RCYSTVYDET INFFKANGAL DVTTAGSVAN VGLMAQKAEE
YGSHPTTFEA PADGEIRVIL ANGETLHSHE VEAGDIWRAC TVKKAPIENW IQLALDRQRL
TGSEAIFWLD ANRAHDAELI KYVKPALDAA GVADKFLIMA PREATRQSLE TITAGKDSIA
ITGNVLRDYL TDLFPILELG TSAKMLSIVK LMNGGGLFET GAGGSAPKHV QQLVEENHLR
WDSMGEFCAL GESLKFLADV KGNEKAGVLG AAAEVATQGI LDNNKSPERK VGQPDNRDSH
YWFARYWAEA LAAQGDDAEL AAHFKPIAEA LASNEAAILS ELAAAQGGAA DIGGYYHPSV
EKKAAVMRPS ATLNGIIG
|
|---|
| |