| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0464 |
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| Symbol | |
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| ID | 4078346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 482295 |
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| End bp | 483101 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005760 |
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| Product | amino acid ABC transporter permease |
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| Protein accession | YP_612459 |
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| Protein GI | 99080305 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAATC GCCACAAGCG CGAAGACAAA GAAGATTTCC CGTGGTGGCT GGTCGCAGTC
GGACTGACCG CGCTCTATCT GGGCATTGAG GTCGCACTGA GCGACGTCTA CGCACAGATC
ATGAACACGC TGTGGCGGGG CGTTGGGATT ACCATCTTCG TCACGATTGT GAGCTTCTTC
TCCGCCTCGG CTTTGGGTCT TGCGCTCGCA CTCGGGGCAG AATCGCGTTG GCTGGTGCTG
CGGCAGGTCT GCCGCTTTTA CGTCGAGGTG GTGCGCGGCG TGCCAATCAT CGTGCTGTTG
CTTTATGTGG CCTTTGTACT GGCACCGGCG CTTGTGGATC TGCGCAACTG GCTTGGCGGT
TTTCTCGGTC TTGAGGACAT TCGCACCCGC AACTTCCCGC TCCTGTGGCG CGCGATCGTG
GCCCTTATGA TCGCCTATTC GGCCTTCATT GCCGAAGTCT TCAGGGCCGG TCTGCAGTCG
GTACCCGACG GCCAGATCGA GGCGGCAAAG GCGCTCGGGC TCTCGGGTTG GAAGCGGTTT
CGCTTTGTGG TGTTCCCGCA GGCCATCCGC ACGATCCTGC CGCCGCTTGG CAATGACTTT
GTCGCGCTGG TCAAGGATTC CTCGCTGGTG TCCGTGCTGG GCGTTCTGGA CATCACGCAG
CTGGGCAAGG TCACGGCCGC CAGCAACTTT CGCTATTTCG AGACCTACAA CATGGTCGCG
CTCATCTATC TGGCGATGAC GATTTCCCTG TCTTTGGCCC TGCGCGCATT GGAGCGGCAC
TTGCGCAGCA AGCAAGAGCA TCGCTAG
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| Protein sequence | MTNRHKREDK EDFPWWLVAV GLTALYLGIE VALSDVYAQI MNTLWRGVGI TIFVTIVSFF
SASALGLALA LGAESRWLVL RQVCRFYVEV VRGVPIIVLL LYVAFVLAPA LVDLRNWLGG
FLGLEDIRTR NFPLLWRAIV ALMIAYSAFI AEVFRAGLQS VPDGQIEAAK ALGLSGWKRF
RFVVFPQAIR TILPPLGNDF VALVKDSSLV SVLGVLDITQ LGKVTAASNF RYFETYNMVA
LIYLAMTISL SLALRALERH LRSKQEHR
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