| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0456 |
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| Symbol | rpoH2 |
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| ID | 4078338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 473334 |
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| End bp | 474212 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005752 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_612451 |
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| Protein GI | 99080297 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.369824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTGG ACGAGACCAC CAAGAACCCC CTCCCGAAGC AGGCCATGAA AGCCGAGCTT
CTGGATGCAG AGACGGAATT GGCGTTGGCC TACGCATGGC GCGATGAGAA GGACGTGCAG
GCGCTCCATC GTCTGATCAC AGCCTACATG CGGCTCGCAG TGTCGATGGC GTCAAAATTC
CGCCGCTATG GCGCCCCGAT GAATGATCTC ATCCAAGAGG CAGGGCTTGG CCTGATGAAG
GCGGCAGAGA AATTTGATCC CGACCGCGGC GTGCGGTTCT CGACCTACGC GGTCTGGTGG
ATCAAGGCGT CCATTCAGGA CTACGTGATG CGCAACTGGT CGATGGTGCG CACTGGCTCG
ACCTCCTCGC AGAAGTCCCT GTTCTTCAAC ATGCGCCGTG TGCAGGCGCA ACTCGAGCGC
GAGGCAGCCG GCGAAGGCGT GGAACTCGAC CGTCACAAGC TGATGCAGAT GGTTGCAGAA
GAGATCGGCG TGCCGCTGCG CGATGTCGAG ATGATGGACG GCCGCCTCGC GGGTGCTGAT
TTCTCGCTGA ACGCAGTGCA GTCGGCAGAC GAGGACGGGC GCGAGTGGAT CGACGCCTTG
GAAGATGACA GCGAACAGGC TGCGGACCGC GTGGAGGCCG ATCATGATCG TCGCCAGCTG
CGCGAGTGGC TGCTCTCGGC GCTGAATGGT CTCAATGAGC GCGAGCGCTT TATCGTGCGC
GAGCGCAAAC TGAGAGAAGA GGCGCGCACT CTGGAGAGCC TCGGCAATGA ATTGGGACTG
TCAAAAGAGC GCGTGCGTCA GCTGGAAGCC GCCGCCTTCT CAAAGATGAG AAAGAGCCTT
GAAGGTCAGT CCCGTGAGGT GCAGAACTTC CTTGCATGA
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| Protein sequence | MALDETTKNP LPKQAMKAEL LDAETELALA YAWRDEKDVQ ALHRLITAYM RLAVSMASKF
RRYGAPMNDL IQEAGLGLMK AAEKFDPDRG VRFSTYAVWW IKASIQDYVM RNWSMVRTGS
TSSQKSLFFN MRRVQAQLER EAAGEGVELD RHKLMQMVAE EIGVPLRDVE MMDGRLAGAD
FSLNAVQSAD EDGREWIDAL EDDSEQAADR VEADHDRRQL REWLLSALNG LNERERFIVR
ERKLREEART LESLGNELGL SKERVRQLEA AAFSKMRKSL EGQSREVQNF LA
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