Gene TM1040_0440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0440 
Symbol 
ID4076083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp456593 
End bp457903 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content62% 
IMG OID638005736 
Productphenylacetate-CoA ligase 
Protein accessionYP_612435 
Protein GI99080281 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1541] Coenzyme F390 synthetase 
TIGRFAM ID[TIGR02155] phenylacetate-CoA ligase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.908613 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGATT TGACACCAAA CCGGGACGAA TTGGATCCGA TCGAGATCGC GTCCATCGAC 
GAGATCCGCA GCCTGCAATT GGAGCGCCTG AAATGGTCGC TGCGCCACGC CTATGACAAT
GTGGCGATGT ATAAGGCGCG GTTTGATGCA GCGGGCGTCC ACCCCGACGA CCTGCAGGAG
CTGTCGGATC TCGCAAAGTT CCCCTTCACC ACCAAAGGTG ATCTGCGCGA TGCCTATCCT
TTTGGGATGT TTGCGGTCCC GCGCGAACAG ATCCTCCGGC TGCATGCGTC TTCTGGCACC
ACGGGCAAGC CGACCGTGGT GGGGTACACG CGAAAGGACA TCGACACTTG GGCGGACCTC
TTGGCGCGGT CCTTGCGCGC CTCCGGCCTG CGGCGCGGCG ATATGGTGCA TAACGCCTAT
GGCTACGGGC TGTTCACTGG CGGGCTTGGC GCACATTACG GCATTGAGCG CCTCGGCGCG
ACGGTGGTGC CGATGTCGGG CGGCCAGACC GAAAAGCAAG TGACGCTGAT TGAGGATTTC
CGCCCCGACG GCATCATGGT GACGCCGTCC TACATGCTGA ACATCCTCGA GCAATATCAC
CGCATGGGGA TCGATCCGCG TAGCTCTTCG CTGAAGGTTG GCGTCTTTGG CGCGGAACCC
TGGACCGATG CGATGCGCCG CGAGGTCGAG GCGGCCTTTG ATATGCATGC GGTGGATATC
TATGGTCTCT CGGAAATCAT GGGGCCGGGT GTCGCCAATG AATGTGTGGA GACGAAGGAC
GGGCCGGTCA TCTGGGAGGA TCACTTCCTG CCGGAAATCA TCGACCCCGA AACAGGCGCG
GTGCTGCCCG ATGGCGAGTT GGGCGAACTG GTCTTCACAA CACTCACCAA GGAAGGCCTG
CCGATGGTGC GCTACCGCAC CCGCGACCTG ACACGCCTGC TCCCGGGCAC GGCGCGTTCA
ATGCGGCGGA TGGCCAAGAT CACCGGCCGG TCGGATGACA TGATCATCCT GCGGGGCGTC
AATGTGTTTC CCAGCCAGAT CGAAGAGCAG ATGCTCACGG TAGAGGCGCT CGCGCCCTAC
TATCAGATCG AGCTTTACAG CAAGGGCCGC ATGGACGCGA TGCGCATCCA TGTCGAGGTC
TTGCCAGCGG CCACCGCACC CGAACAACGC GAGGCCTGCA CCAAGCAGCT GGCCAAGCGG
ATCAAGGATA TCGTTGGCAT CTCGGCAGAG ATTTCGGTAG GCGAGCCCGG CAGTGTCGAA
CGCTCGCAGG GCAAGGCGCG CCGCGTCGTC GACAATCGCA ACAAAGGATA A
 
Protein sequence
MLDLTPNRDE LDPIEIASID EIRSLQLERL KWSLRHAYDN VAMYKARFDA AGVHPDDLQE 
LSDLAKFPFT TKGDLRDAYP FGMFAVPREQ ILRLHASSGT TGKPTVVGYT RKDIDTWADL
LARSLRASGL RRGDMVHNAY GYGLFTGGLG AHYGIERLGA TVVPMSGGQT EKQVTLIEDF
RPDGIMVTPS YMLNILEQYH RMGIDPRSSS LKVGVFGAEP WTDAMRREVE AAFDMHAVDI
YGLSEIMGPG VANECVETKD GPVIWEDHFL PEIIDPETGA VLPDGELGEL VFTTLTKEGL
PMVRYRTRDL TRLLPGTARS MRRMAKITGR SDDMIILRGV NVFPSQIEEQ MLTVEALAPY
YQIELYSKGR MDAMRIHVEV LPAATAPEQR EACTKQLAKR IKDIVGISAE ISVGEPGSVE
RSQGKARRVV DNRNKG