| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0409 |
|---|
| Symbol | |
|---|
| ID | 4078803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 419857 |
|---|
| End bp | 420426 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005704 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612404 |
|---|
| Protein GI | 99080250 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.63828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCC TCCTCGGCAT CACTGTCCTC GTGCTGCTCT TGCTTTTGTG GCGGCCCGGC
TTTGGCTTTC GCGCCCAGCG CCCCTCTGAC TACACCGGCA CAGGTCCTGC CTTTGACATC
CGCACACATC TGAACGGGCG TTTCATTTCC GAAGGGATGA TCTACGGGCC AACCGGCCGC
GTGGTCTCCC GCTTTGTGGC TGAGATGAAC GGCACCTGGG ACGGCACCCG TGGCACGCTG
TCAGAAGATT TTTCCTATGC TGGCGGTGGC ACACAGGCCA GACAATGGAA CCTCGAGATC
CACGAAAACG GCAGCTTCAC CGCAACTGCA GAGGATATCA TCGGCACGGG CACAGGCCAG
CACGAAGGCG CCACGGTGCG GCTTCAGTAT CGCATTCGCC TGCCCAAGGA TGCCGGTGGT
CATGTGCTTG ATGTGACTGA CTGGATGTAT CTAATGGAGA ATGGGACCAT CATGAACCGT
TCCGAGATGC GCAAATTCGG CATCAAGGTT GCAGAGCTTG TCGCCACCAT TCGCCCCGCG
CCCGACACAG ACGCACCGGA ACAGTCATGA
|
|---|
| Protein sequence | MKLLLGITVL VLLLLLWRPG FGFRAQRPSD YTGTGPAFDI RTHLNGRFIS EGMIYGPTGR
VVSRFVAEMN GTWDGTRGTL SEDFSYAGGG TQARQWNLEI HENGSFTATA EDIIGTGTGQ
HEGATVRLQY RIRLPKDAGG HVLDVTDWMY LMENGTIMNR SEMRKFGIKV AELVATIRPA
PDTDAPEQS
|
|---|
| |