| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0405 |
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| Symbol | |
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| ID | 4078799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 414942 |
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| End bp | 416294 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005700 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_612400 |
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| Protein GI | 99080246 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0236304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTCT CCAGCGTCAT TCGCGACGAA TACTCTGAAT CGCTGTCGTC AGCGTCGATC
CTTGTGATTG ATGACGAACC CGGGATGCGT CATTTCATGA CAAAAATCCT GGAACCCCGC
TGCAAGCGCG TGGAGCAGGC CGCCTCGGCG GCCGAGGCGT CGGATATTCT CGACAAGGCC
CATTTCGACC TCATTGTGCT TGATAACATC ATGCCGGGCA AAACCGGCCT TGATTGGGTG
GCTGAACAGC GCCGGGTCGG TTTGTTTGCC GATACCATCC TGGTCACAGC CTATGCGGAC
CTCGATACGG CGATTCAGGC GCTGCGGATC GGAATTGCAG ATTTTGTGCT CAAGCCGTTT
CGCGCCAATC AGATCCTCAA TGCGGTGGCG CGCGCCCTCG ACCGCAAGTA CCTGCGGCGT
GAAAACTATC TATTGAAACA CGAGCTCTCT GCCGAGAAAT CCAGCGCGCG GGGGCGTCTT
CTCGGAAAAT CTGCCGCCAT TGAGAAGGTG CGAAAGATGT TGCAGCGTCT CGCGCCGCTG
CCGACGCCGG TGCTGTTTAC GGGGGCGTCG GGAACCGGCA AGGAGATCGC GGCCCGCACA
CTGCATTCGC TGTCGGATCG CGCAGAGCAG CCCTTTGTTG CCATCAACTG TGCCAGCCTG
TCGCCGGATC GGCTTGCCGA AGAGCTTTTC GGCGTCGTGG ACGCGCAAGA TCGCCGCCGT
GATGGGCTGT TTTTGCATGC AGATGGTGGC ACGCTGTTTT TGGATGAGGT GGCGCAGATG
CCCGAACAGG TGCAGGCGGC CCTGTTGCGG GTTCTGGAGG ATCAAAAGGT TCGCCCGGTA
GGCGCCGAAC GTGATATTCC GCTCAACCTG CGCTTTTTGT TGGCCACCAA TGCGGATCTG
CTGCAGGCGG TCGAGGAGGG AAAATTCCGC GCTGACCTTT ATCACCGGAT CAATGTGGTC
AATATCGAGA TGCCCGCCCT CAAAGAGCGC ATCGAGGATA TTGTGGAGCT GGCCGCGCTG
TTCATGGATC AATTTGCGCT GAGCCTTGGC ATGCCCGCGC TGGAACTTGA TGAGGAAACA
CTTCTGAAAT TCTCACGCTA TGCGTGGCCA GGTAATGTGC GCGAGTTGCG CAATCTGATC
GAACGCTCGG TTATCCTTGG CGCTTTTCCC GAAGAGTTTT CCGGCACGGG TTCTGTGATC
GGAGCCGCCG CCGTCGAAAA CCTCGATATG GTCATGCAGC GCCACATCAT GCACGTGTTG
GACGCCTGCG ATGGGAACCG GGCAGAGGCG GCCCGACGAC TGGGAGTGTC GCGCAAGACC
GTCGACAGGA AATGCGCAAG CTGGGGGCTA TAG
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| Protein sequence | MNVSSVIRDE YSESLSSASI LVIDDEPGMR HFMTKILEPR CKRVEQAASA AEASDILDKA
HFDLIVLDNI MPGKTGLDWV AEQRRVGLFA DTILVTAYAD LDTAIQALRI GIADFVLKPF
RANQILNAVA RALDRKYLRR ENYLLKHELS AEKSSARGRL LGKSAAIEKV RKMLQRLAPL
PTPVLFTGAS GTGKEIAART LHSLSDRAEQ PFVAINCASL SPDRLAEELF GVVDAQDRRR
DGLFLHADGG TLFLDEVAQM PEQVQAALLR VLEDQKVRPV GAERDIPLNL RFLLATNADL
LQAVEEGKFR ADLYHRINVV NIEMPALKER IEDIVELAAL FMDQFALSLG MPALELDEET
LLKFSRYAWP GNVRELRNLI ERSVILGAFP EEFSGTGSVI GAAAVENLDM VMQRHIMHVL
DACDGNRAEA ARRLGVSRKT VDRKCASWGL
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