| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0404 |
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| Symbol | |
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| ID | 4078798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 413522 |
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| End bp | 414805 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005699 |
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| Product | cytochrome c, class I |
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| Protein accession | YP_612399 |
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| Protein GI | 99080245 |
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| COG category | [C] Energy production and conversion
[R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat
[COG3474] Cytochrome c2 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.06087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGGC GACTGGCTCT TGGCCTGCTC CTCTGCGCCG CCTCTGGGGT GAGCGCGGAG
GAGTTCCAGA CCCTCAAAGG ACACGGAGGG CCGATCATGG CGCTTGCCGT GAACGATCGG
GGGCACGTGG CCAGCGCCAG TTTCGACAAT TCCGTCTCAC TCTGGCAGGA GGGGGCGCCG
AGCTGGCTCG AGGCACATGA AGCAGCCGCG ACCGTGGTGG CCTTTGGCCC TGATGATACC
CTGTTCAGCG CAGGCGACGA CTTTGTGATT TATCGCTGGC AGCAGGGCCA CCCCCAAGAG
ATCGGACGGC ATACCGCCAA GATCCGCGCC TTGGACCTCT CGCGCGATGG GGAATGGCTC
GCCTCCGCAA GCTGGGATGG CGGCATTGGT CTTTGGCCTA TGAGTGCGGG CACGCCCCGC
CGCATCGCGG TTGGAACGGG CGTGAACGAT CTTGCCTTTG ACGGGGCCGG TCGCCTCTTC
GTCGCCACCA TGACCGGGCA GATCCAAGTC TTCGACAGCC CGGAGGCTGC CCCACGAATT
CTGGCGGAAC AAGGGTTTGG CATCAACCGT TTGGTGCTCT CTGCTGCTGG CTGGCTGGCC
TATGGCGCCG TTGATGGCGG CACCCGTGTG ATCAACGCAG AAACCGGGGC CGAGATTGCC
GATTTCACCC TCGACCGGCG GCCCATACTG GCCCTTGCGC ATCATGCCGA GAGCCAGCAG
ATCGCCGTGG GTGATGGGCA TGGCTATATC ATGATGATCG ACACACACGA CTGGAGCATT
GCGCGCGATT TTCGGGCCAT GCGCGAAGGC CCCGTCTGGG CTCTGGCGTT TTCAAAGGAC
GGCCAGCGGG TCTGGGCAGG CGGCATACAC GATGTGATCT ATGGCTGGCC CATCGCGCTG
ATGGCCAGCA GCCCAGCGGC GGGAACCGAG ACCCGCACAT TCCTGCAGGC GCCTGAAACC
ATGCCCAATG GTGAGCGCCA ATTCATGCGA AAATGCTCGG TTTGCCACGA TTTGGTCGCC
ACAGAGCAGC GGCGCGCCGG TCCTCATCTG GCGGGGCTCT TTGGACGACC GGCCGGCAGT
CTGCCTGGCT ATCGGTATTC CGACACGCTG GCGCAGTCTG ACATCATCTG GGGTGCCGAG
ACCATCGATG CCCTGTTCGA TCTCGGCCCT GACCATTATA TTCCGGGGTC CAAGATGCCG
ATGCAGCGCA TCACCGCCCC CACAGATCGC CAAGATCTGA TAGACTATCT GAAAACCGCG
ACACAACTTT CGGAGGATAA TTGA
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| Protein sequence | MLRRLALGLL LCAASGVSAE EFQTLKGHGG PIMALAVNDR GHVASASFDN SVSLWQEGAP
SWLEAHEAAA TVVAFGPDDT LFSAGDDFVI YRWQQGHPQE IGRHTAKIRA LDLSRDGEWL
ASASWDGGIG LWPMSAGTPR RIAVGTGVND LAFDGAGRLF VATMTGQIQV FDSPEAAPRI
LAEQGFGINR LVLSAAGWLA YGAVDGGTRV INAETGAEIA DFTLDRRPIL ALAHHAESQQ
IAVGDGHGYI MMIDTHDWSI ARDFRAMREG PVWALAFSKD GQRVWAGGIH DVIYGWPIAL
MASSPAAGTE TRTFLQAPET MPNGERQFMR KCSVCHDLVA TEQRRAGPHL AGLFGRPAGS
LPGYRYSDTL AQSDIIWGAE TIDALFDLGP DHYIPGSKMP MQRITAPTDR QDLIDYLKTA
TQLSEDN
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