| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0358 |
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| Symbol | |
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| ID | 4077688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 363664 |
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| End bp | 364962 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005653 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_612353 |
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| Protein GI | 99080199 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.257959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGA TCTACACCAC AGTCATTTTC CTCTTTGTGC TGTTTGCGCT TCTGGGCGGG
TCGGTCTGGA TCGGTCTCGC GCTGATGGGC GTGGCCTGGG TCGGGATGGA GCTTTTCACC
ACCCGTCCGG CAGGGGATGC GATGATCACA ACCATCTGGA GCGGCGCGTC GAGCTGGACG
CTTACGGCCC TGCCGCTCTT TATCTGGATG GGCGAAATCC TGTATCGGAC CCGATTATCG
GAGGACATGT TCCGGGGACT TGCACCATGG ATGCGGTTCC TGCCGGGGGG GCTTTTGCAC
ACCAATATTG CCGGTTGCAC AATCTTTGCT GCGGTCTCGG GGTCATCTGC GGCGACGCTC
AACATGGTTG GCAAGATGTC GATCCCGGAA CTGCGCGCGC GCGGCTATCC CGAGTATATG
ATCATTGGCA CACTTGCGGG CGCGGCAACT CTCGGCCTGA TGATCCCGCC GTCGCTGACT
CTGATCGTCT ATGGCGTGAC CATAAATGAG AGCATCACCA AGCTGTTCAT GGCGGGGGTA
TTTCCGGGTC TCGTGCTTGC CGGGCTCTTT ATGCTCTATA TCGTGGGCTG GCACTTCTTT
GGCCCGGGCG AACGCCCAAA GCCGGAACCC CGTCTGACAT TCGGTGAGCG GATTGCCGAA
AGCCGGTTCC TGCTTCCGCT CTTCGGGCTC GTCTTTGTGG TGATTGGCTC CATGTATATG
GGTTTTGCCA CCGCAACCGA GGCGGCGGCC GTGGGGGTTC TGGGTGCTCT TGGGCTGTCC
TTGATGCAAG GGAGTCTCAG CTGGGGAACC TTTGTCGAGA GCCTGATGGG CGCGACGCGT
ACCTCGGCGA TGATCGCCTT TATCCTGATG GGGGCTGCAT TCCTGTCGCT GTCGATGGGC
TTTACGGGTC TGCCGCGGGC GCTGGCAGGC ATGATCGAGA GCTACAACCT GTCGCCCATT
GCGCTCATTG CGGTGCTGAC GGTGTTCTAC CTGATCCTCG GCATGTTCAT GGATGGGCTG
TCCTCGGTGG TTCTGACCAT GGCCATTGTG GAGCCGATGA TCCGGCAGGC CGGGATTGAT
GTGATCTGGT TTGGTATCTT CCTCGTGGTG GTCATCGAGA CCGCACAAGT AACGCCACCG
ATCGGCTTCA ATCTCTTTGT GCTGCAGGGC ATGACCCGGC ACGAGATCTC CTACATCGCC
AAAACCGCTG TGCCGATGGT CGCGCTGATG CTGTTGATGG TGGTGATCCT GGTGGTCTGG
CCGGAGCTCG CAACCTGGTT GCCAAACAAC ATCCGTTGA
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| Protein sequence | MSEIYTTVIF LFVLFALLGG SVWIGLALMG VAWVGMELFT TRPAGDAMIT TIWSGASSWT
LTALPLFIWM GEILYRTRLS EDMFRGLAPW MRFLPGGLLH TNIAGCTIFA AVSGSSAATL
NMVGKMSIPE LRARGYPEYM IIGTLAGAAT LGLMIPPSLT LIVYGVTINE SITKLFMAGV
FPGLVLAGLF MLYIVGWHFF GPGERPKPEP RLTFGERIAE SRFLLPLFGL VFVVIGSMYM
GFATATEAAA VGVLGALGLS LMQGSLSWGT FVESLMGATR TSAMIAFILM GAAFLSLSMG
FTGLPRALAG MIESYNLSPI ALIAVLTVFY LILGMFMDGL SSVVLTMAIV EPMIRQAGID
VIWFGIFLVV VIETAQVTPP IGFNLFVLQG MTRHEISYIA KTAVPMVALM LLMVVILVVW
PELATWLPNN IR
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