| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0334 |
|---|
| Symbol | |
|---|
| ID | 4076230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 338687 |
|---|
| End bp | 339277 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638005629 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612329 |
|---|
| Protein GI | 99080175 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4341] Predicted HD phosphohydrolase |
|---|
| TIGRFAM ID | [TIGR03276] phosphonate degradation operons associated HDIG domain protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.169528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGG ATATCGACAG CCTGAACCGC GAGACCATCG TAGCGTTTAT CGGGTCGATT
TTTGATCGCC GCGGGGACGA GGAATATCTG GGCGAGCCTG TGACGATGGG TGAACATATG
TTGCAGGGCG CCACAATCGC AGAGCGCAAC GGCCAGCCCG AAGAGATCAT CGTCGGCGCG
CTGCTGCATG ATATCGGACA TTTCACCAGT GAATTTGGCA CGTTCACGAT GGATGACACC
GAGGATCGCC ATCACGAGGA TGCGGGCGCC GAGGTGCTGG AGCGGTTCTT CCCGTCAGTT
GTCACAGACT GCTGCCGCTA CCATGTGGCG GCCAAGCGGT ATCTCTGTGC CACCCGGCCC
GAGTATTTCA AGCGCCTCTC AGACGCTTCG GTCCACTCTT TGAACCTCCA AGGGGGTCCG
ATGTCACCAG AAGAGGTGAG CGCCTTCGAG CAGAACCCGA ACCTCAAGCA GATCATCGCG
GTGCGTTACC TCGACGAGGC GGGCAAGGTC GCCGGGATGG AGACACCCGA CTTCTGGCAT
TTTGCCCCCA TGGTGCAGCG GATGGTCGAT CGGCATCTGT CTGCGGTCTG A
|
|---|
| Protein sequence | MKPDIDSLNR ETIVAFIGSI FDRRGDEEYL GEPVTMGEHM LQGATIAERN GQPEEIIVGA
LLHDIGHFTS EFGTFTMDDT EDRHHEDAGA EVLERFFPSV VTDCCRYHVA AKRYLCATRP
EYFKRLSDAS VHSLNLQGGP MSPEEVSAFE QNPNLKQIIA VRYLDEAGKV AGMETPDFWH
FAPMVQRMVD RHLSAV
|
|---|
| |