| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0329 |
|---|
| Symbol | |
|---|
| ID | 4076225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 334033 |
|---|
| End bp | 334734 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638005624 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612324 |
|---|
| Protein GI | 99080170 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3665] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGTT TTGACCGCCC CTTTGAGGCC GCGCGGCCCG ATGGCGAAAA CCCAAGCGCC
CATGAGACGC TGGCAGAAGG CGGACGACTG CGTCCCGAGG CGACCTATAC CATTCCTGCC
CGACAGGGGC GGGCGATCCG CATGGCACAG GGGGAGGCCT TGATGGTCAT CAACCGGGAT
GGCAGCCAGA TCGGGGATTT CTGGGCCTTT GTGGAGGGTG ACTGTGGCGA GTACCTGTCA
ATGGAGCACC TGCGCCCGAC GTTGAGGCGC GTCTCGCCGC GTCCCGGCGA TGTGCTGGTG
AGCAATCGCC GCCGTCCGAT CCTGACGTTG CTGGAGGATA GTTCGCCCGG GGTCCACGAC
ACGCTTGTGG CCTCCTGCGA TGTGCATCGC TACGCGCAGC TTGGGCATGA GGGCTATCAC
GACAATTGCA CCGACAACCT GCGCATGGCG CTGGGCGCGC TGGGTCTGCG CCCGACCACG
GTGCCTTGTC CGCTGAACCT CTGGATGAAC ACCCCCGTGG TCGAGGGCGG CGCGATGGAA
TGGCGCCCTC CGGTCTCACG CAGGGGGGAC CATGTGCTGT TTCGCGCGGA ACTGGATGTC
GTGGTGGTGA TTTCCTGCTG CCCGATGGAT CTCTTGCCAA TCAACGGTGA GGAGGCGCAG
CCCCGCGCGC TGGATGTGCG GCTGCGCCCA AGGCCCGCGT GA
|
|---|
| Protein sequence | MTSFDRPFEA ARPDGENPSA HETLAEGGRL RPEATYTIPA RQGRAIRMAQ GEALMVINRD
GSQIGDFWAF VEGDCGEYLS MEHLRPTLRR VSPRPGDVLV SNRRRPILTL LEDSSPGVHD
TLVASCDVHR YAQLGHEGYH DNCTDNLRMA LGALGLRPTT VPCPLNLWMN TPVVEGGAME
WRPPVSRRGD HVLFRAELDV VVVISCCPMD LLPINGEEAQ PRALDVRLRP RPA
|
|---|
| |