| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0320 |
|---|
| Symbol | |
|---|
| ID | 4076216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 325584 |
|---|
| End bp | 326150 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638005615 |
|---|
| Product | carboxymuconolactone decarboxylase |
|---|
| Protein accession | YP_612315 |
|---|
| Protein GI | 99080161 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGT TCACCCATCA TTCGATCGAA ACCGCCCCCG AAGCTGCAAA GCCGCTGATG
GAACAGGCCG TGAAGGACTA TGGCATGCTG CCTGGCCTTT ATCAGGTGAT GTCCGCGTCG
CCGGAGCTGC TGGAGAGCTA TTTCAAACTG CATGAGCTGT TTGAGCGCAC CGCGCTTTCG
GTCACCGAGC GCAACATCGT GTGGCTGACG ATCAACGTCG AGCATGATTG CCACTACTGC
GTGCCCGCAC ATACCGCCAT TGCCAAGATG CAGGGGGTCG ATGACGAGAT TGTCGCCGCT
CTGCGGGAGG AGCGTCCGCT TGCCGATCCG CGCCTTGAGG CGCTGCGCCA GTTCACACTG
ATCCTCGTGC GCGAGCGGGG CAATGCTCCA AAGGCAGAGG TGGAGCGCTT TCTTCAGGCC
GGGTTCGAGC CGCGCGCGAT CCTCGATATT CTTGTTGGTT TGGCGCAGAA GGTTCTGTCG
AACTACACCA ACCACCTCGC AGAGACGCCA GTAGACGCGC CGTTCCAGGC GTTTGCCTGG
GAGAAAACAG CCGTCGCTGC GGAATAA
|
|---|
| Protein sequence | MTVFTHHSIE TAPEAAKPLM EQAVKDYGML PGLYQVMSAS PELLESYFKL HELFERTALS
VTERNIVWLT INVEHDCHYC VPAHTAIAKM QGVDDEIVAA LREERPLADP RLEALRQFTL
ILVRERGNAP KAEVERFLQA GFEPRAILDI LVGLAQKVLS NYTNHLAETP VDAPFQAFAW
EKTAVAAE
|
|---|
| |