| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0308 |
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| Symbol | |
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| ID | 4077131 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 314351 |
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| End bp | 315850 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005602 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_612303 |
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| Protein GI | 99080149 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGAG TTGTCTTCGG GCCGCCGATG CTGGCCTTCC TGCCTGCCAT CAGCCTCAGC
GCCTTCTGGT TTGGCGGCGA ATCCGCGCTG CTGGCCGTGG CCCTTGGATT GCCGCTGACC
TACGCCGTGC TTGGGGGTTT TTCCAAATCG CGCGAAACTA CACCGGGGCG GGACGAGCTG
ACCGGATTCC TGCTGGCGCC GGGGTTTGAA ACCCATGTGC GCGATGTGTT TGACCGCACC
GAGGGTACGG GCCTCAAATC CGCACTGGTG GTGGTCGAAA TCGACGAATT CGATGCGCTT
GTGGCCGCCC ATGGCCAGGA CGCCGGTGAC ATCGTGATGC AGCGCGTGGG CGAGCGCATG
CGCTCGATCC TGCGTCATCG CGACACCATT GCGCGACTGG GGCGCAACCG CTTTGCGATC
TGCCTCACCC CGATCATGCA GCTTGATCTG GAGCTCTGCA TCCAGCTCGC CGGACGCTTG
CAGTTCCGGA TTGAAGAGCC GATCAAATTC GGGGGCACAT CGCTCTTTGT GTCCTGCTCG
ATCGGAATCT GTCAGCGCCA CCGCGTCCCC AAGGACGCCG GCAGCAGCTG GCTCGATTGC
GCGGTCGCCG CCCTTGACGA GGCGCTGGTG GTCGGCCCCT CCAGCATCCG CGCATATTCC
AGTGACACGC ATGTTCATCT GGACCGCACC GTCAACCTGA TGGAGGACGC GGCCTCCGCG
CTCCAGAACG GTATGATCCA GGCCTGGTTC CAGCCACAGA TCTGCACCGA CACCGGGCGC
GTATCGGGGT TTGAGGCGCT GGCACGCTGG TGCCACCCGG TCAAAGGCAT GATCCCCCCG
TCGGCTTTTC TGCCCGCTCT CGAACATGCC GGTCTGCTGC AAAAACTCAG CCAGGTCATG
GTTGAACAAG CGCTGACCGC GCTGAAATCC TGGGATGCCG CTGGGCTCAA GGTGCCAACG
GTTGGAGTGA ACTTCGCCAC GGACGAGCTG CGCGATCCCG GCTTGGTCAA CCGCATTCGC
TGGGAACTGG ACCGCTTTGG CCTGACCCCG GACCGGCTCA CCATCGAGGT GCTGGAAACG
GTAATGACCG ATCAGCCGGA CGAGGTGGTG GCACGCAACA TCACCGCCCT GGGCGAGATG
GGCTGCCACA TTGATCTCGA CGATTTTGGC ACCGGTCATG CCTCCATTGC CTCCGTGCGC
CGTTTCCGCG TGTCCCGGAT CAAGATCGAC CGGTCTTTTG TCACCAAAGC GGATCACGAT
CCCGAGCAGC AGAAGATGAT CACCGCGATT CTGACCATGG CAGAACGGCT TGACCTCAAG
ACCCTCGCCG AAGGGGTGGA GACCGCAGGC GAACACGCTC TCTTGGCGCA GCTGGGCTGT
GATCATGTGC AGGGGTTCGG GATCGGTCGC CCGATGCCCT TTGACCAGAC CATCGATTGG
GTCATCAACC ACGAGGCCAA GCTTCAGGAC GCCCCCGCCA TCGGTCGCCA GCGCCCCTGA
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| Protein sequence | MSRVVFGPPM LAFLPAISLS AFWFGGESAL LAVALGLPLT YAVLGGFSKS RETTPGRDEL
TGFLLAPGFE THVRDVFDRT EGTGLKSALV VVEIDEFDAL VAAHGQDAGD IVMQRVGERM
RSILRHRDTI ARLGRNRFAI CLTPIMQLDL ELCIQLAGRL QFRIEEPIKF GGTSLFVSCS
IGICQRHRVP KDAGSSWLDC AVAALDEALV VGPSSIRAYS SDTHVHLDRT VNLMEDAASA
LQNGMIQAWF QPQICTDTGR VSGFEALARW CHPVKGMIPP SAFLPALEHA GLLQKLSQVM
VEQALTALKS WDAAGLKVPT VGVNFATDEL RDPGLVNRIR WELDRFGLTP DRLTIEVLET
VMTDQPDEVV ARNITALGEM GCHIDLDDFG TGHASIASVR RFRVSRIKID RSFVTKADHD
PEQQKMITAI LTMAERLDLK TLAEGVETAG EHALLAQLGC DHVQGFGIGR PMPFDQTIDW
VINHEAKLQD APAIGRQRP
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