| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0296 |
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| Symbol | |
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| ID | 4077119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 302763 |
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| End bp | 304091 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005590 |
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| Product | amino acid ABC transporter permease |
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| Protein accession | YP_612291 |
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| Protein GI | 99080137 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACA TTTCTTTTGT ACGCACAGAG ATGCTGCCGC CCAAAGAACC CCCTGCAAGC
GAAGTGGGTG TGCTGGGCTG GATGCGCGCA AACCTGTTCT CGAACTGGTT CAACTCGGTC
CTGACCCTGG TATCGCTCTA TTTTGTGATC CAGATCCTGA TAGGGCTGAT CACTTGGGCC
TGGGTGCCAA CATGGTCGGC GGGCTCGCTC CCGGAGTGTC GTGTCATCTT TGAAGAGCTG
GGCCGCACGG GCCACAATGC CGGGGCCTGC TGGGGCGTGA TCGCCGAACG CTGGCCGCAG
CTGCTGTTTG GGTTCTACCC GAATGGCTCC GAGCCGGGGA CGGCTGACCT GCGCTGGCGA
CCGGTTCTGG CCTTCTTGCT GCTGTTCGTG GCTTTGGCGC CGGTGCTCTT TGCCGACAAG
GTGCCTGCAA AGCTGATCTA CTTCAGCGCA GCATACCCGT TCCTGATGCC CTGGCTTCTG
TGGGGCGGTA CCGTTTGGAC GCCGGTTATG ATCGCAGCGG GCTTTGTTGT GGGCTACTTC
GTCTACAAAG CGGTGTCGCA AGCGACGTCG GAACTGATTG GCCTGATTTC AGGGGTCGTT
GGCGCCGTTG TCTGGTGGCT CTTTGTGGCG TCGTTCATTG CGTCGGTTCT TGCAGGGATC
GTGCCTTTGG CACTGGAATC TGTCGAGTCG CGCCAGTTCG GGGGCTTCAT GCTGTCGATC
CTCATCGGGG TTGTGGCCAT CGGTCTGTCC TTGCCGATCG GGATCGTGCT GGCGCTTGGT
CGTCAGTCGG ACCTGTTGAT CGTCAAGACA CTCTGCGTGG GCTTTATCGA GTTCATTCGC
GGTGTGCCGC TGATCACGCT TCTGTTTGTG GCCTCGACGC TGTTGAACAT CTTCATGCCT
CCGGGGACGA ACTTTGACAT CATCATGCGT GTGTTCATCA TGGTGACGCT CTTTGCCTCT
GCCTATATGG CCGAGGTGAT CCGGGGTGGC CTCGCGGCTC TGCCCAAGGG TCAGTATGAG
GGTGCCGACA GTCTTGGCCT CAATTACTGG CAGGCGCAGC GTCTGATCAT CATGCCGCAG
GCATTGAAGA TCTCCATTCC GGGCATCGTC TCCACCTTCA TCGGCGTTTT CAAGGACACC
ACCCTGGTGT CGGTCATCGG TCTCTTTGAC CCGCTGAACC TGACAAACGC CATCCGTGCT
GACGCAAATT GGAACGGCCT CGTGTGGGAG CTTTATGGCT TCATCGCGCT TCTGTTCTTC
GTCTTCTGCT TCGGCATGTC CCGCTATTCC ATGTACCTGG AGCGCAAACT CCAGACTGGC
CACCGTTAA
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| Protein sequence | MSDISFVRTE MLPPKEPPAS EVGVLGWMRA NLFSNWFNSV LTLVSLYFVI QILIGLITWA
WVPTWSAGSL PECRVIFEEL GRTGHNAGAC WGVIAERWPQ LLFGFYPNGS EPGTADLRWR
PVLAFLLLFV ALAPVLFADK VPAKLIYFSA AYPFLMPWLL WGGTVWTPVM IAAGFVVGYF
VYKAVSQATS ELIGLISGVV GAVVWWLFVA SFIASVLAGI VPLALESVES RQFGGFMLSI
LIGVVAIGLS LPIGIVLALG RQSDLLIVKT LCVGFIEFIR GVPLITLLFV ASTLLNIFMP
PGTNFDIIMR VFIMVTLFAS AYMAEVIRGG LAALPKGQYE GADSLGLNYW QAQRLIIMPQ
ALKISIPGIV STFIGVFKDT TLVSVIGLFD PLNLTNAIRA DANWNGLVWE LYGFIALLFF
VFCFGMSRYS MYLERKLQTG HR
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