| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0295 |
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| Symbol | |
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| ID | 4077430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 301493 |
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| End bp | 302761 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005589 |
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| Product | amino acid ABC transporter permease |
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| Protein accession | YP_612290 |
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| Protein GI | 99080136 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.934704 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGACTT TGACTGACCC GCCGAAAGAG ACTTTTCGGC TGTCGATGCT GATTTACGAC
ACCCGTTATC GCTCAGCCAC CATTCAGGTT GTCGCGCTGA TCGGGTTCTT GATCCTGGTT
GGATCAATCA TCAGCAATAC CGCACAAAAC CTAGCAGATC TGGGTAAAGA GCCCAGTTTC
AGATTCCTGT CAGAGCCTGC GGGCTATGAC ATCAACCAGC GCCTTCTGGA TTATGACAAT
CAGGACAGCC ACATGCGCGC GTCCCTGATG GGGCTGTTGA ACACGCTGGT TGTGGCCGTT
CTGGGCTGTA TTACCGCAAC CATTCTGGGT GTGATCATCG GTGTTCTGCG CCTGTCTTCG
AACTGGCTTG TTGCCCGTTT GATGGCCGTT TACGTCGAGA TGTTCCGCAA CGTGCCGCTG
CTCTTGTGGA TCGTGTTCAT CATGGCGATC CTGATCGAGA CCCTGCCTGC GCCGCGGGCG
TTCCGGGGGG AAAACCCCGA AGCGACCATG AGCGTCTTTG ACAGCGTTGC CGTCACCAAC
CGCGGTGTCT ATGTCCCGGA GCCGCTGTTC CATAACTCCC TTGGAAACAT AGGTGTTTTT
GGTGATTCAG CTGTTCGCTT TGACGTCTCG CTGGACCTGA TCGCGTTGCT GGTCGTTCTG
GGCGCGAGCC TTTATGTCTC CAAACGCATC CGCCTCTGGG CCGATCAGAC ACAGGAGAGC
ACGGGGCTTC GGCCAACCAC CTGGCACATG CGCTCTGCCG TGGTTGTGCT GCCTTCGGCG
TTGCTGCTGT TCGTGCTGGG GTTCCATCTG GGCTATCCGG CGCTCAAGGG GTTCAACTTT
GCGGGCGGCA CTCACCTGCG GAACTCCCTG ATCGCTTTGT GGCTTGCGCT TTCGCTTTAC
ACGGCTGCGT TTATCGCTGA AATCGTGCGC TCTGGTATCC TTGCGATCTC CAAGGGGCAG
ACAGAGGCGG CCGCCGCCCT TGGCCTGCGT CCCAAGCGTA TCATGAACCT TGTGATCCTG
CCGCAGGCGC TGCGCGTGAT CATTCCGCCG CTGATCTCTA ACTATCTGAA CCTGACCAAG
AACTCCTCGC TCGCGATCGC CGTGGGCTAC ATGGATCTGA CCGGGACCTT GATGGGGATC
ACCATGAACC AGACCGGACG GGAGTTGGAA ACCGTGCTTT TGGGCATGCT CGTGTACCTC
ACGATCAGCC TGCTGATTTC CAGCGTCATG AACTGGTACA ACAATCGCGT CAAACTGGTG
GAGCGGTAA
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| Protein sequence | MSTLTDPPKE TFRLSMLIYD TRYRSATIQV VALIGFLILV GSIISNTAQN LADLGKEPSF
RFLSEPAGYD INQRLLDYDN QDSHMRASLM GLLNTLVVAV LGCITATILG VIIGVLRLSS
NWLVARLMAV YVEMFRNVPL LLWIVFIMAI LIETLPAPRA FRGENPEATM SVFDSVAVTN
RGVYVPEPLF HNSLGNIGVF GDSAVRFDVS LDLIALLVVL GASLYVSKRI RLWADQTQES
TGLRPTTWHM RSAVVVLPSA LLLFVLGFHL GYPALKGFNF AGGTHLRNSL IALWLALSLY
TAAFIAEIVR SGILAISKGQ TEAAAALGLR PKRIMNLVIL PQALRVIIPP LISNYLNLTK
NSSLAIAVGY MDLTGTLMGI TMNQTGRELE TVLLGMLVYL TISLLISSVM NWYNNRVKLV
ER
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