| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0291 |
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| Symbol | |
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| ID | 4077426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 297539 |
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| End bp | 298585 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638005585 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_612286 |
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| Protein GI | 99080132 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.503835 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCG TGCAAATGAT CACCGTGACC GAAGACGACG GCGGCCAGCG GATCGACCGC
TGGTTGCGGC GTCTGTTCCC GCATGTGAAC CAGGGCCGCA TCGAGAAGAT GTGTCGCAAG
GGCGAGCTGC GTCTGGATGG CGGTCGCGTC AAGGCCAACA CCCGTGTTGA GGCGGGACAG
GTTGTGCGGG TGCCCCCGCT GGCCGAGAGC GACATGAAAC CGGCCGAGGC GCGCCCGGTG
AAGATCTCGG ATGCTGACGC CAAGATGATT CGCGATTGCG TGATCTACAA GGACGACGAT
GTTCTGGTGA TCAACAAACC GGCCGGACTG GCGGTGCAGG GCGGCTCTGG CACCACCAAA
CACGTAGATG GCCTCTCGGA AGCACTGCGC TTTGACGCCG AGGACAAGCC GCGGCTGGTG
CATCGTCTCG ACAAGGACAC ATCCGGGCTC TTGGTGCTGG CGCGCAACCG CAAGGCGGCG
CAGGGGCTGA CCGCAGCCTT TCGCCACAAG AACACCCGCA AGATCTACTG GGCCTTGGTG
GCAGGCGTGC CGACGCCCTA CCTTGGCGAG ATCAAGACCG GGCTCGTAAA GGCGCCGGGA
CATGGCAAAT CCGGCGAGGG CGAAAAGATG ATCCCCGTTG ATCCGCGCGA TGTGGATGCC
ACGCCCGGGG CAAAGCGCGC GCATACCTAT TATGCCACGC TCTACCGCGT TGCGAGCCGT
GCAAGCTGGG TCGCGATGGA GCCGGTGACG GGCCGCACCC ACCAGCTGCG TGCGCATATG
GCGGGCATGG GGCATCCGAT CATTGGCGAT GGCAAATATG GCGGCTCGGG TCAGGAGAAC
CTCGGCGATG GCTGGGGCGC GCAAATCGGC GGTCTGATCT CGAAGAAACT GCACCTGCAT
GCGCGCCGTT TGCAGTTCGA ACACCCCGTC ACCGGCAAAG TGGTGACAGT GACTGCCGCG
CTGCCCGACC ACATGAAAGA GAGCTGGGAC ACCTTTGGCT GGACCGAGGA TCTGGCCGCC
GACGACCCGT TTGAGACGCT GTTTTGA
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| Protein sequence | MSGVQMITVT EDDGGQRIDR WLRRLFPHVN QGRIEKMCRK GELRLDGGRV KANTRVEAGQ
VVRVPPLAES DMKPAEARPV KISDADAKMI RDCVIYKDDD VLVINKPAGL AVQGGSGTTK
HVDGLSEALR FDAEDKPRLV HRLDKDTSGL LVLARNRKAA QGLTAAFRHK NTRKIYWALV
AGVPTPYLGE IKTGLVKAPG HGKSGEGEKM IPVDPRDVDA TPGAKRAHTY YATLYRVASR
ASWVAMEPVT GRTHQLRAHM AGMGHPIIGD GKYGGSGQEN LGDGWGAQIG GLISKKLHLH
ARRLQFEHPV TGKVVTVTAA LPDHMKESWD TFGWTEDLAA DDPFETLF
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