| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0287 |
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| Symbol | |
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| ID | 4077422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 292758 |
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| End bp | 294155 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005581 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_612282 |
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| Protein GI | 99080128 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGCA GTCTCGCCCT TCCCCTGACG ATTGCCCTCG CAACTGCTCT GCCGCTTGCG
TCACCAGCAG AGACCAAGAT CCCGCAGAGC CAGACCGAGA TCTCGCTGGG CTTTGCCCCC
TTGGTCAAAG AGGCCGCGCC CGCTGTGGTG AATATCTATG CCAAGATCAT CCGTCAGGAC
CGTGCGCGCA GCCCCTTTGC CGATGATCCT TTCTTTGATG ATTTCTTTCG CCAGTTTGCC
CAGCCGCGCC CAAGGGTGCA GAACTCGCTC GGCTCTGGTG TAATCCTCTC CGAAGATGGC
ATCGTGGTCT CCAACTATCA CGTCGTGGGC GAGGCGTCGG ATATTCGCGT GGTGACCAAC
GACCGCCGTG AATATCAGGC CGAGGTGATC CTTGCGGATC AGGCGTCCGA TCTGGCGATC
CTGCAACTGC AAGATGCCGA AGGGCTGCCG CATCTGGGAT TGCGCAACAG TGATGAGGTC
GAGGTGGGCG AGCTGACCCT GGCCATCGGC AACCCGTTCG GGGTCGGTCA GACGGTGTCC
TCCGGCATTA TTTCCGGGCT TGCGCGCACC GGTACCGGCG GCGGGCAGGG CTTTGGCTAT
TACATCCAGA CCGATGCGCC GATCAATCCT GGCAACTCTG GTGGGGCGCT GATTGATGTG
AATGGCGATC TCATCGGGAT CAACACGCGG ATCCTCAGCC GTTCGGGTGG CTCCAACGGG
ATTGGCTTTG CCATTCCGGC CAATCTGGTG CGTGAATTTG TGCGACAGGC GCGGGCCGGT
GCAGAGGAGT TTCAACGCCC CTGGGCGGGG ATGACTGGCC AGCCGGTGGA TTCCGATCTG
GCAGAAGCGC TGGGCCTTGG TCAGGTGGAT GGGATGTTGA TTTCAGAGCT CCACCCCCAG
AGCCCCTTTG TCGAGGCGGG ATTTGAGGTT GGCGATGTGG TGCTGGCCGT GGATGGCGAG
CCGGTGAACT CGCCCTCGGA GATGGCCTTT CGCTTGTCGG TGGCGGAACT GGGCGGCACC
AGCGCGGTGA CGCGGGTGCG TCAGGGCAAG ACGGACACTG TTGAGGTCGC CTTGATCGAA
GCGCCTGACA CCCCCGCCGC CGATCCGATC ACGCTGAGCG AGCGCACCCC GATGCCGGGT
CTGGTGGTGG GACGGGTGAA CCCGCAGGTC ATCACCAAGA TGCAGCTACC GCTATCGACC
GAGGGTGTTG TGGTGATGGA CCCCGGCCCC TATGCCGGAC GCGGCGGCGT GCGCGCGGGG
GATTTGATTT TTGCGATCAA CGGCGAGGCG GTTGAGGCCC CCGAAGATGT AGCAAATCTC
CTGATGAGCA GTGACCGCTG GATGCGGATG GACCTGATGC GTCAGGGCCA GCGCGTGTCT
CTGCGGTTCC GGCTCTGA
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| Protein sequence | MIRSLALPLT IALATALPLA SPAETKIPQS QTEISLGFAP LVKEAAPAVV NIYAKIIRQD
RARSPFADDP FFDDFFRQFA QPRPRVQNSL GSGVILSEDG IVVSNYHVVG EASDIRVVTN
DRREYQAEVI LADQASDLAI LQLQDAEGLP HLGLRNSDEV EVGELTLAIG NPFGVGQTVS
SGIISGLART GTGGGQGFGY YIQTDAPINP GNSGGALIDV NGDLIGINTR ILSRSGGSNG
IGFAIPANLV REFVRQARAG AEEFQRPWAG MTGQPVDSDL AEALGLGQVD GMLISELHPQ
SPFVEAGFEV GDVVLAVDGE PVNSPSEMAF RLSVAELGGT SAVTRVRQGK TDTVEVALIE
APDTPAADPI TLSERTPMPG LVVGRVNPQV ITKMQLPLST EGVVVMDPGP YAGRGGVRAG
DLIFAINGEA VEAPEDVANL LMSSDRWMRM DLMRQGQRVS LRFRL
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