| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0286 |
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| Symbol | |
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| ID | 4077421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 291466 |
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| End bp | 292560 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638005580 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_612281 |
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| Protein GI | 99080127 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.969107 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCC TCTCTCAGAC ACCGACCCAT GATCTGCGCA TCACCGACAT GCAGGAATTG
ATCTGCCCCG AAGCCCTCGC GGTGAAACAC CCGCTGACAG ATGCCGCGCG CGAAACCGTG
CTCTCGGCGC GCGCCAGCAT CCAGAAGATC CTGCATGGCG CCGACGACCG GCTGGTCGTC
GTGGTCGGCC CCTGTTCGAT CCACGACCCG GAGGCCGCGC TGGACTATGC GCGCCGTCTT
GCGCCGCTGC GCGCCGAGCT GGGCGATGCG CTTGAGATCG TGATGCGGGT CTACTTTGAA
AAACCGCGCA CCATCGCGGG CTGGAAGGGG CTGATCAACG ACCCCAACCT TGATGGGTCT
TTCCGCATCA ACAAGGGGTT GTCGGTCGCC CGCAAGCTCT GCCTGGATCT GAGCGAAATG
GGCCTGCCCG TGGGGACCGA ATTCCTCGAT GCCTCGGTGC CGCAATACAT CAGTGATCTG
GTGAGCTGGG CCGCGATTGG CGCCCGCACC ACCGAGAGCC AGATCCACCG CGAAATGGCT
TCGGGCCTGA GCTGCCCGGT GGGCTTCAAG AACGGCACCC GCGGCAATGT GCAGATCGCC
ATTGACGCGG TGCGCTCGGC GGCCACACCG CATCATTTCA TGGCGCTGGC CCCCTCGGGT
CTCGCGGCGA TTGCGGCGAC GGCCGGAAAC CCGGATTGCC ACATCATCCT GCGCGGCGGC
GGTGGTACCA ACTTTGATGC CGAGAGCGTG GATTCAGCCT GCAAAAAGGC CGAAGCCGAT
GGCATCCGTC CGCAGGTGAT GATCGACGCA AGCCACGCCA ACTCTGCCAA GGATCCCGCC
AAACAGCCCG AGGTGCTCTC GGATGTGGCC GGCCAGATGG CACAGGGTGA GACCCGCATC
ACCGGCATCA TGATCGAAAG CCACCTCGAA CAGGGTCGTC AGGATCTGCC CAAGGACGGG
GACCTGTCGA AACTCACCTA TGGTCAGTCG ATCACCGACG GCTGCATCGG CTGGGAGCAA
ACCGAGGCCG AGCTGCGCAA ACTGGCCCAG GCGGTCAAAA CACGCCGCAC GCAGGGCGCC
CGCCTGGCGG GTTGA
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| Protein sequence | MTTLSQTPTH DLRITDMQEL ICPEALAVKH PLTDAARETV LSARASIQKI LHGADDRLVV
VVGPCSIHDP EAALDYARRL APLRAELGDA LEIVMRVYFE KPRTIAGWKG LINDPNLDGS
FRINKGLSVA RKLCLDLSEM GLPVGTEFLD ASVPQYISDL VSWAAIGART TESQIHREMA
SGLSCPVGFK NGTRGNVQIA IDAVRSAATP HHFMALAPSG LAAIAATAGN PDCHIILRGG
GGTNFDAESV DSACKKAEAD GIRPQVMIDA SHANSAKDPA KQPEVLSDVA GQMAQGETRI
TGIMIESHLE QGRQDLPKDG DLSKLTYGQS ITDGCIGWEQ TEAELRKLAQ AVKTRRTQGA
RLAG
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