| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0283 |
|---|
| Symbol | |
|---|
| ID | 4077418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 288006 |
|---|
| End bp | 288905 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005577 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_612278 |
|---|
| Protein GI | 99080124 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.285129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTC TGTTCACCGG AGGCTCTGGC AAAGCTGGAC GCCATGTCAT CGCCTATCTG
CTGGCGCAGG GGCATCGGGT CGTCAATGTG GATCTCACCC CGCTCGATCT GCCCGGTGTG
GACAATCGCA TCGCGGATAT GACCGATGCG GGTCAGATGC ATGACGTGAT GCACGCCTGG
GCCGGATATG ACGAGATGGA GCAGCATCGG AGCCCGCCGC CCTTTGACGC GGTGGTGCAT
TTTGCAGCCA TCCCGCGCCT GCTGATGCGG TCGGACAATG AGTGCTACCG GATCAACACC
GTGGGCACCT ACAATGTGAT CGACGCCGCC CTGAAGGCGG GGGTGCGCAA GGTGATCTTT
GCTTCGTCCG AGACCACCTA TGGCATCTGT TTTGCCGGGG GCGAGCGCAA GCCCGAGTAT
CTGCCGATCG ACGAAGCACA TCCGGTGGTG CCCGAAGACG CCTATGCAAT GTCCAAGGTG
GCCAATGAAC AGGCGGCGCT GAGCTTTCAA CGCCGCAGTG GCGCCGACAT CTATGGATTG
CGCATCAACA ACGTGATCGA ACCCCATGAA TACAAGGCGA ACTTCCCAGC CTATATGGCC
GATCCCGAAC TCAGACGGCG CAATATCTTT GCCTATATCG ACGCCCGCGA CCTCGGCCAG
ATGGTGCAGC GCTGTCTGGA CGCCGACGGG CTTGGCTATG AGATCTTCAA CGTCGCCAAT
GAGGACCATT CGGTGAACCT CAGCACCTCG GAGATCATCA GCCACTACTA TCGCGGCATC
CCCAAGGCCG AGATGGGCGA GACGGAGACC TTCTATTCCA TCGAGAAAGC AAAGCGGATG
TTGGGATTTG CGCCGGAGCA CAATTGGCGA ATGTACCTCA ATGACCCGCG CGAGGCCTGA
|
|---|
| Protein sequence | MRILFTGGSG KAGRHVIAYL LAQGHRVVNV DLTPLDLPGV DNRIADMTDA GQMHDVMHAW
AGYDEMEQHR SPPPFDAVVH FAAIPRLLMR SDNECYRINT VGTYNVIDAA LKAGVRKVIF
ASSETTYGIC FAGGERKPEY LPIDEAHPVV PEDAYAMSKV ANEQAALSFQ RRSGADIYGL
RINNVIEPHE YKANFPAYMA DPELRRRNIF AYIDARDLGQ MVQRCLDADG LGYEIFNVAN
EDHSVNLSTS EIISHYYRGI PKAEMGETET FYSIEKAKRM LGFAPEHNWR MYLNDPREA
|
|---|
| |