| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0279 |
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| Symbol | |
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| ID | 4077414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 284956 |
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| End bp | 285972 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005573 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_612274 |
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| Protein GI | 99080120 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.464101 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCATA AGAATTGGGC AGAATTGATC AAGCCCACGC AGCTTGAGGT GAAACCGGGC
AATGATCCGG CACGTCAGGC AACGCTCGTT GCGGAACCGC TGGAGCGTGG CTTTGGTCTG
ACGCTCGGCA ACGCGCTGCG CCGCATCCTG ATGAGCTCGC TGCAAGGCGC GGCCATCACA
TCCGTCCAGA TCGACAACGT GCTGCACGAG TTTTCCTCCG TGGCCGGTGT TCGTGAAGAC
GTCACAGACA TCATCCTGAA CCTCAAGCAG GTCTCCCTGC GCATGGAAGT CGAAGGGCCC
AAGCGCCTGT CGATCAATGC CAAAGGTCCG GCCGTCGTCA CCGCAGGCGA CATTGCCGAA
ACCGCTGGCA TCGAAGTTCT GAACCGCGAG CACGTCATCT GCCACCTCGA CGATGGTGCG
GATCTGTTCA TGGAACTCAC TGTCAACACC GGCAAAGGCT ATGTCTCTGC CGAGAAGAAC
AAGCCCGAGG ACGCACCGAT TGGTCTTATT CCGATCGACG CGATCTATTC CCCGGTCAAG
AAGGTCTCTT ACGACGTTCA GCCGACCCGC GAAGGTCAGG TTCTGGACTA TGACAAGCTG
ACCCTCAAAG TTGACACCGA CGGCTCCATC ACCCCCGAAG ACGCGCTGGC TTTTGCGGCC
CGCATCCTTC AGGACCAGCT GTCGATCTTC GTGAACTTCG ACGAGCCGGA ATCCGCAGGT
CGTCAGGACG AGGACGATGG TCTCGAGTTC AACCCGCTTC TCCTCAAGAA AGTGGACGAG
CTGGAACTGT CCGTGCGTTC GGCAAACTGC CTCAAGAACG ACAACATCGT CTATATCGGC
GATCTGATCC AGAAAACCGA AGCCGAGATG CTCCGCACCC CGAACTTCGG CCGCAAGTCC
TTGAACGAAA TCAAGGAAGT GCTGTCTGGC ATGGGTCTGC ACCTCGGTAT GGACGTCGAG
GACTGGCCGC CGGACAACAT CGAAGAGCTG GCCAAGAAAT TCGAAGACAG CTTCTAA
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| Protein sequence | MIHKNWAELI KPTQLEVKPG NDPARQATLV AEPLERGFGL TLGNALRRIL MSSLQGAAIT
SVQIDNVLHE FSSVAGVRED VTDIILNLKQ VSLRMEVEGP KRLSINAKGP AVVTAGDIAE
TAGIEVLNRE HVICHLDDGA DLFMELTVNT GKGYVSAEKN KPEDAPIGLI PIDAIYSPVK
KVSYDVQPTR EGQVLDYDKL TLKVDTDGSI TPEDALAFAA RILQDQLSIF VNFDEPESAG
RQDEDDGLEF NPLLLKKVDE LELSVRSANC LKNDNIVYIG DLIQKTEAEM LRTPNFGRKS
LNEIKEVLSG MGLHLGMDVE DWPPDNIEEL AKKFEDSF
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