| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0277 |
|---|
| Symbol | rpsM |
|---|
| ID | 4077412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 284068 |
|---|
| End bp | 284436 |
|---|
| Gene Length | 369 bp |
|---|
| Protein Length | 122 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638005571 |
|---|
| Product | 30S ribosomal protein S13 |
|---|
| Protein accession | YP_612272 |
|---|
| Protein GI | 99080118 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0099] Ribosomal protein S13 |
|---|
| TIGRFAM ID | [TIGR03631] 30S ribosomal protein S13 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.630615 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACGTA TTGCCGGCGT TAACATCCCG ACCGCCAAAC GGGTTCCGAT CGCCCTGACT
TATATCACGG GTATCGGCCC TGCATCCGCC AAAGCTATCT GTGAGGCCGT GAACATCGAC
GCAACCCGTC GTGTGAACGA ACTCTCCGAC GCAGAAGTTC TGGCCATCCG CGAACACATC
GACGCCACCT ACACCGTTGA AGGTGACCTG CGTCGTGAAG TGCAGATGAA CATCAAGCGC
CTGATGGACC TGGGCTGCTA CCGTGGCCTG CGCCACCGTC GCAACCTGCC GGTTCGTGGT
CAGCGCACCC ACACCAACGC TCGTACTCGC AAAGGCCCCG CAAAGGCCAT TGCCGGTAAG
AAGAAGTAA
|
|---|
| Protein sequence | MARIAGVNIP TAKRVPIALT YITGIGPASA KAICEAVNID ATRRVNELSD AEVLAIREHI
DATYTVEGDL RREVQMNIKR LMDLGCYRGL RHRRNLPVRG QRTHTNARTR KGPAKAIAGK
KK
|
|---|
| |