| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0247 |
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| Symbol | rplD |
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| ID | 4076007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 265996 |
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| End bp | 266613 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005541 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_612242 |
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| Protein GI | 99080088 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.767965 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.730186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACTTG ACGTGATCAA ACTGGACGGC GGCAAAGCGG GCGACATCGA ACTGTCCGAA
GACCTGTTCG GCCTGGAGCC GCGTGCGGAC ATCCTGCACC GTGTGGTCCG TTGGCAGCGC
AACAACGCGC AGGCCGGCAC CCACAAGGTG AAGACCCGCT CCGAGACCTC CTACTCCACC
AAGAAGATCT ACCGCCAAAA AGGCACCGGT GGCGCACGCC ACGGCGACCG TAACGCGCCG
ATCTTCCGCA AAGGTGGTAT CTACAAGGGT CCGACCCCGC GTAGCCACGG CCACGATCTG
ACCAAGAAAT TCCGCAAGCT GGGTCTGCGC CACGCGCTGT CCGCCAAAGC AAAAGCGGGT
GAACTGGTCG TGATCGAGAA CGCAGAAGCC GAAGGCAAGA CCGCCGCTCT GGCCAAGCAG
GTTGCAAACC TGGGCTGGAA ACGCGCTCTG GTCATCGACG GTGCTGCCGT CAACGAAGGC
TTCGCTCGTG CCGCCAAAAA CATCGAAGGT CTGGATATAC TGCCGTCGAT GGGCGCAAAC
GTCTATGACA TCCTGAAGCG TGACACCCTC GTGCTCACGA AGTCGGCTGT CGAAGCACTG
GAGGCTCGTC TGAAATGA
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| Protein sequence | MKLDVIKLDG GKAGDIELSE DLFGLEPRAD ILHRVVRWQR NNAQAGTHKV KTRSETSYST
KKIYRQKGTG GARHGDRNAP IFRKGGIYKG PTPRSHGHDL TKKFRKLGLR HALSAKAKAG
ELVVIENAEA EGKTAALAKQ VANLGWKRAL VIDGAAVNEG FARAAKNIEG LDILPSMGAN
VYDILKRDTL VLTKSAVEAL EARLK
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