| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0240 |
|---|
| Symbol | |
|---|
| ID | 4076000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 259503 |
|---|
| End bp | 259973 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638005534 |
|---|
| Product | 30S ribosomal protein S7 |
|---|
| Protein accession | YP_612235 |
|---|
| Protein GI | 99080081 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0049] Ribosomal protein S7 |
|---|
| TIGRFAM ID | [TIGR01029] ribosomal protein S7, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.303028 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGTC GTCACGCTGC TGAAAAACGC GAAGTTCTGC CCGATGCAAA ATTCGGCGAC
CGCGTTCTCA CCAAATTCAT GAACAACCTG ATGATCGATG GTAAAAAATC GGTCGCAGAG
CGTATCGTTT ACAACGCCTT CGATCGCGTT GAATCGAAAA TCAAGCGCGC GCCCGTGGAA
GTGTTCCACG AAGCTCTCGA CAACGTGAAA CCCTCCGTTG AGGTCCGTTC GCGTCGTGTG
GGTGGTGCAA CCTACCAGGT TCCCGTCGAA GTGCGCCCCG AGCGTCGTGA AGCGCTGGCA
ATCCGCTGGC TGATCACTGC GGCCCGTGGT CGCAACGAGA ACACAATGGA AGAACGCCTC
GCCGGCGAGC TCCTCGATGC TGTACAAAGC CGGGGTACTG CCGTTAAGAA GCGCGAAGAC
ACTCACAAGA TGGCAGAGGC CAACAAAGCC TTCTCGCACT ATCGCTGGTA A
|
|---|
| Protein sequence | MSRRHAAEKR EVLPDAKFGD RVLTKFMNNL MIDGKKSVAE RIVYNAFDRV ESKIKRAPVE
VFHEALDNVK PSVEVRSRRV GGATYQVPVE VRPERREALA IRWLITAARG RNENTMEERL
AGELLDAVQS RGTAVKKRED THKMAEANKA FSHYRW
|
|---|
| |