| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0235 |
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| Symbol | |
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| ID | 4076268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 251905 |
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| End bp | 256137 |
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| Gene Length | 4233 bp |
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| Protein Length | 1410 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005529 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_612230 |
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| Protein GI | 99080076 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0585906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGG AAATCACCAA CAACCCGTTC AACCCGCTGA CTCCGCCCAA GGTCTTTGAC
GAAATCAAAG TCTCGCTGGC CAGCCCCGAA CGGATCCTGT CTTGGTCCTA CGGCGAGATT
AAAAAGCCGG AAACCATCAA CTACCGTACG TTCAAGCCCG AGCGTGACGG CCTGTTCTGC
GCGCGTATCT TTGGCCCGAT CAAAGACTAC GAATGTCTCT GCGGCAAATA TAAGCGCATG
AAGTATCGCG GCGTTGTCTG CGAGAAATGT GGTGTTGAAG TTACCCTTCA AAAAGTGCGC
CGCGAGCGCA TGGGCCACAT CGAACTGGCG GCACCCGTTG CGCATATCTG GTTCCTGAAG
TCGCTTCCTT CCCGGATCGG CCTCATGCTG GACATGACCC TGCGTGATCT GGAACGTGTT
CTGTACTTTG AAAACTACGT TGTCATCGAG CCGGGTCTGA CTGACCTGCA ATACGGCCAG
ATGATGACCG AAGAAGAGTA CATGGACGCG CAAGACGCCT ATGGCATGGA CGCTTTCACC
GCCAATATCG GTGCGGAAGC GATCCGCGAA ATGCTGGCGG CGATCGATCT TGAGGCAGAA
GCCGAGCACC TGCGCGCCGA ACTGGCCGAG GCCACCGGCG AACTGAAGCC CAAGAAGATC
ATCAAACGTC TGAAAGTCGT TGAATCCTTC CTCGAGTCGG GCAACCGTCC TGAGTGGATG
ATCATGACCG TGATCCCGGT TATCCCGCCG GAACTGCGTC CGCTGGTTCC GCTGGATGGG
GGCCGTTTTG CGACCTCCGA CCTCAACGAC CTCTATCGTC GTGTGATCAA CCGGAACAAT
CGTCTGAAGC GACTCATCGA GCTGCGCGCG CCTGACATCA TCGTCCGCAA CGAAAAGCGG
ATGCTGCAGG AATCCGTTGA TGCTCTGTTC GACAACGGCC GTCGTGGTCG CGTCATCACC
GGTGCCAACA AGCGTCCGCT GAAGTCGCTC TCCGACATGC TGAAGGGTAA GCAGGGTCGC
TTCCGTCAGA ACCTTCTCGG TAAACGCGTC GACTTCTCCG GTCGTTCGGT TATTGTGACC
GGCCCCGAGC TGAAGCTGCA CCAGTGTGGC CTGCCCAAGA AGATGGCGCT CGAACTCTTC
AAGCCCTTCA TCTACTCGCG TCTGGAGGCC AAAGGTCTGT CCTCCACCGT GAAGCAGGCG
AAGAAGCTCG TTGAAAAAGA ACGTCCCGAA GTTTGGGATA TCCTCGACGA GGTGATCCGC
GAGCACCCGG TGATGCTGAA CCGCGCACCG ACGCTGCACC GTCTTGGTAT TCAGGCGTTC
GAACCCACGC TGATCGAAGG TAAAGCGATC CAGCTGCACC CGCTGGTCTG TTCGGCGTTC
AACGCGGACT TCGACGGTGA CCAGATGGCC GTGCACGTCC CGCTGAGCCT TGAGGCCCAG
CTGGAAGCGC GCGTCCTGAT GATGTCGACG AACAACGTTC TGTCGCCCGC AAACGGTGCG
CCGATCATCG TTCCCTCGCA GGATATGATC CTTGGTCTCT ACTACCTCAC GCTGGAGCGT
GAAGGCATGA AGGGCGAAGG CAAGATCTTT GGCAACCTCG ACGAGGTCCA GCACGCGCTG
GACGCGGGCG AGGTGCATCT GCACTCCAAA GTGACCGTGC GGGTTCCGCA GATCGACGAA
GAGGGCAACG AAGTCTTCCA ACGCTTCGAG ACCACGCCGG GCCGTGCCCG TCTGGGCTCC
TTGCTGCCGA AGAACGCCAA GGCACCGTTT GAACTGGTGA ACCGTCTGCT GCGCAAACGC
GAAGTTCAGC AGGTCATCGA CACCGTCTAC CGTTACTGCG GTCAGAAAGA GTCGGTGATC
TTCTGTGACC AGATCATGAC CATGGGCTTC CGCGAAGCGT TCAAGGCGGG CATCTCGTTC
GGCAAGGACG ACATGGTGAT CCCCGACAAC AAGTGGACCA TCGTCGACGA CACCCGCGAT
CAGGTGAAAG ACTTTGAACA GCAGTACATG GACGGCCTGA TCACTCAGGG CGAAAAGTAC
AACAAGGTTG TCGATGCCTG GTCGAAGTGT AACGACAAGC TCACCGAAGC CATGATGTCC
ACCATCTCGG CGGTCAAAAA GGCTGAAGAT GGCTCCGACA TGGAACCGAA CTCGGTCTAT
ATGATGGCGC ACTCCGGTGC GCGTGGCTCC GTGACGCAGA TGCGTCAGCT GGGCGGGATG
CGCGGCCTGA TGGCAAAGCC GAACGGCGAC ATCATCGAGA CCCCGGTTAT CTCGAACTTT
AAAGAAGGCC TCACCGTTCT GGAGTACTTC AACTCCACCC ACGGTGCGCG TAAGGGTCTG
TCGGACACCG CTCTGAAAAC GGCGAACTCC GGTTACCTTA CACGTCGTCT TGTGGACGTG
GCGCAGGACT GCATCGTGCG CGAGCACGAC TGTGGCACCG AGCGTGCGAT CACGGCTGAA
ACCGCGGTCA ACGACGGTGA AGTTGTGGCG TCTCTTGGTG AGCGTATCCT GGGTCGTGTG
GCGGCAGATG ACGTCAAGCG TCCAGGCACC GAAGAAGTCC TGTTGGCTGC AGGTCAGCTC
ATTGACGAAC GTATGGCCGA CACCATCGAG GAAGCTGGCG TTCAGTCCAT GCGCATCCGC
AGCCCGCTGA CCTGTGAAAG CGAAGAGGGC GTCTGCGCCA TGTGCTATGG CCGCGACCTT
GCACGCGGCA CCATGGTCAA CTCCGGTGAG GCCGTCGGCA TCATCGCGGC GCAGTCCATC
GGTGAACCAG GTACACAGCT GACGATGCGG ACCTTCCACA TCGGCGGCGT GGCCCAGGGT
GGTCAGCAGT CCTTCCTCGA GGCGTCCCAG GAGGGCAAGA TCGTGTTCGA GAACACGAAC
ACGCTCACCA ACGCCAACGG CGAAGTTCTG ACCATCGGCC GGAACATGAA GCTGATCATT
CAGGACGAGC ACGGTGAAGA GCGCTCCAGC CACAAGCTGG GCTACGGTAC CAAGCTCTTT
GTGAAAGAGG GCCAAGAGGT CAAACGCGGC GATAAACTGT TCGAGTGGGA CCCCTATACC
CTGCCGATCA TCGCCGAGAA GCCGGGTACC GCGAAGTACG TGGACCTCGT GTCCGGTCTG
GCCGTGCGCG AAGAAACCGA CGATGCCACC GGCATGACCC AGAAGATCGT GATCGACTGG
CGTGCGGCAC CGAAGGGGTC TGACCTGAAG CCGGAGATCA TCCTTGTGGG TGACGATGGC
GAACCAGTGC GCAACTCCCT TGGAAACCCG CTCACCTATC CGATGTCCGT GGATGCGATC
CTGTCCTGTG AAGATGGCCA GAAGATCGAA GCCGGTGACG TTGTTGCGCG TATCCCGCGT
GAAGGCGCGA AGACGAAGGA CATTACCGGT GGTCTGCCGC GTGTGGCCGA ACTCTTCGAG
GCGCGTCGTC CGAAGGATCA CGCGATCATC GCGGAAATCG ACGGCTATGT GCGCTTTGGT
CGTGACTACA AGAACAAGCG TCGTATCTCG ATCGAGCCGG CAGATGAGTC CATGGAGGCC
GTGGAATACA TGGTGCCCAA GGGCAAGCAC ATCCCGGTGG TCGAAGGCGA CTTCGTTCAG
AAGGGCGACT ACATCATGGA CGGCAACCCG GCGCCGCATG ACATCCTCTC CATCATGGGT
GTCGAGGCTC TGGCGAACTA CATGATCGAC GAGGTGCAGG ACGTCTATCG CCTGCAGGGT
GTGAAGATCA ACGACAAGCA CATCGAGGTG ATCGTTCGCC AGATGCTGCA GAAGTGGGAG
ATCTCCGACT CTGGCGAGAC CACGCTCCTC AAGGGCGAAC ACGTCGACAA GCAGGAGTTC
GACGCTGCAA ACGAGAAGGC GCTGGCCCGT GGCAAGCGTC CTGCTCAGGG CGAGCCGATC
CTTCTTGGTA TCACCAAGGC GTCGCTGCAG ACCCGCTCCT TCATCTCCGC GGCCTCCTTC
CAGGAGACCA CACGGGTGCT CACCGAAGCC TCCGTACAGG GCAAGAAGGA CAAGCTGGTC
GGCCTGAAGG AAAACGTCAT CGTGGGTCGT CTGATCCCGG CGGGTACCGG TGGTGCCACC
CAGCAGGTGC GTCACATCGC GGCCTCGCGC GACAATGTGG TTCTTGAGGC CCGTCGTGAA
GAAGCCGAAG CGGCGGCAGC CCTTGCTGCG CCGATGGCGG ATGATGCGGC GGATGCGGAC
TTCCTCGTGG AAACCCCGGA AAGCCGCGAC TGA
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| Protein sequence | MNQEITNNPF NPLTPPKVFD EIKVSLASPE RILSWSYGEI KKPETINYRT FKPERDGLFC
ARIFGPIKDY ECLCGKYKRM KYRGVVCEKC GVEVTLQKVR RERMGHIELA APVAHIWFLK
SLPSRIGLML DMTLRDLERV LYFENYVVIE PGLTDLQYGQ MMTEEEYMDA QDAYGMDAFT
ANIGAEAIRE MLAAIDLEAE AEHLRAELAE ATGELKPKKI IKRLKVVESF LESGNRPEWM
IMTVIPVIPP ELRPLVPLDG GRFATSDLND LYRRVINRNN RLKRLIELRA PDIIVRNEKR
MLQESVDALF DNGRRGRVIT GANKRPLKSL SDMLKGKQGR FRQNLLGKRV DFSGRSVIVT
GPELKLHQCG LPKKMALELF KPFIYSRLEA KGLSSTVKQA KKLVEKERPE VWDILDEVIR
EHPVMLNRAP TLHRLGIQAF EPTLIEGKAI QLHPLVCSAF NADFDGDQMA VHVPLSLEAQ
LEARVLMMST NNVLSPANGA PIIVPSQDMI LGLYYLTLER EGMKGEGKIF GNLDEVQHAL
DAGEVHLHSK VTVRVPQIDE EGNEVFQRFE TTPGRARLGS LLPKNAKAPF ELVNRLLRKR
EVQQVIDTVY RYCGQKESVI FCDQIMTMGF REAFKAGISF GKDDMVIPDN KWTIVDDTRD
QVKDFEQQYM DGLITQGEKY NKVVDAWSKC NDKLTEAMMS TISAVKKAED GSDMEPNSVY
MMAHSGARGS VTQMRQLGGM RGLMAKPNGD IIETPVISNF KEGLTVLEYF NSTHGARKGL
SDTALKTANS GYLTRRLVDV AQDCIVREHD CGTERAITAE TAVNDGEVVA SLGERILGRV
AADDVKRPGT EEVLLAAGQL IDERMADTIE EAGVQSMRIR SPLTCESEEG VCAMCYGRDL
ARGTMVNSGE AVGIIAAQSI GEPGTQLTMR TFHIGGVAQG GQQSFLEASQ EGKIVFENTN
TLTNANGEVL TIGRNMKLII QDEHGEERSS HKLGYGTKLF VKEGQEVKRG DKLFEWDPYT
LPIIAEKPGT AKYVDLVSGL AVREETDDAT GMTQKIVIDW RAAPKGSDLK PEIILVGDDG
EPVRNSLGNP LTYPMSVDAI LSCEDGQKIE AGDVVARIPR EGAKTKDITG GLPRVAELFE
ARRPKDHAII AEIDGYVRFG RDYKNKRRIS IEPADESMEA VEYMVPKGKH IPVVEGDFVQ
KGDYIMDGNP APHDILSIMG VEALANYMID EVQDVYRLQG VKINDKHIEV IVRQMLQKWE
ISDSGETTLL KGEHVDKQEF DAANEKALAR GKRPAQGEPI LLGITKASLQ TRSFISAASF
QETTRVLTEA SVQGKKDKLV GLKENVIVGR LIPAGTGGAT QQVRHIAASR DNVVLEARRE
EAEAAAALAA PMADDAADAD FLVETPESRD
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