| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0231 |
|---|
| Symbol | |
|---|
| ID | 4076264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 245198 |
|---|
| End bp | 246118 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638005525 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612226 |
|---|
| Protein GI | 99080072 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0825063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGG CAAACAGGCA GCTTTGGCGC GTGGGAGCGA TCATGAATGA GCCTCTCGCA
GAGGTGCTGA AGTTCTGTGC GTGGTACCTT GAGCGCGGCG CGCATGAGTT GGTGATCTGT
TTCGACAATC CCGACGATCC GGCGATTGCG CGGCTTGCCG GTCATCCTCG CATTCGCGCC
ATCCCCTGCA CCGCTGCGTT CTGGGGCGCG CTTGACCTGA CCCCGGATGT GGCCTTTGTC
ACGCGTCAGA ACGCGGCGCT GACGTGGATC TATCATCAGT ATCCGGACGG CTGGCTCTTG
AACGTTGATG CGGATGAGTT CCTGTATCTG GTTGGGCGTG ACGTGGCCGA TCTCTTGGCG
GAGGTGCCCG CAGAGAAAAA ATCCCTGCGC GTGCGAACCG CCGAGCGTGT TTTGACCGAA
GAGAATCCCA CCTGCGCCCA TTTTCGCCTG CCGATGGCGC GTCCGGTCCG ACGCGCGGTG
TATGGCGAGG ATGCGCCTCT TTTTGGCCCC CGAAGAGAGG GGCTTGTGGG CCATTCTCAC
GGCAAATCCT TTGTGCGCAG CGGCATAAGG GGTCTCGTGC TCAGGCAGCA CTGGCCGCGC
GGGCTGCGTG ACGATGGCGC GGATGAGCTG GTTCTGGGCC ATCAGGATCG GGCCTATCTC
TTGCATATGA TCGGCGCGCG CTATGATATC TGGCGCGACA AGGTGACCTG GCGCTCCGCA
TCGCGCGGCT TTACCACGGG GCTGACCGAG CGCATTGCGG CAGCACAAGC CGCGCCCGCG
CCGGAGGAGT CGCTTCGCGA TTTGCACCGG CGTCTGCATG CTGCCACGCC CGCGCGTCTC
TCCGCGCTCC GGGCCAGGGA TGTTCTCCTG ACGGTCCCGC TGGAACTAGA TGCTTTGGCA
GAGGCGCATT TCGGGGCGTG A
|
|---|
| Protein sequence | MAQANRQLWR VGAIMNEPLA EVLKFCAWYL ERGAHELVIC FDNPDDPAIA RLAGHPRIRA
IPCTAAFWGA LDLTPDVAFV TRQNAALTWI YHQYPDGWLL NVDADEFLYL VGRDVADLLA
EVPAEKKSLR VRTAERVLTE ENPTCAHFRL PMARPVRRAV YGEDAPLFGP RREGLVGHSH
GKSFVRSGIR GLVLRQHWPR GLRDDGADEL VLGHQDRAYL LHMIGARYDI WRDKVTWRSA
SRGFTTGLTE RIAAAQAAPA PEESLRDLHR RLHAATPARL SALRARDVLL TVPLELDALA
EAHFGA
|
|---|
| |